SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16629

Length: 986 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16629

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nodulin-like protein n=3 Tax=Andropogoneae RepID=B6TE00_MAIZE	-	-	9.80909e-45	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Sma3	Putative uncharacterized protein OSJNBb0081F12.22	-	-	5.848e-06	-

Source	Gene names
Sma3	LOC_Os10g08850; OSJNBb0081F12.22; OsI_32858; OsJ_30845; PHYPADRAFT_22430;

Source	InterPros	Term	Type	e value	Identity
Sma3	Nodulin-like	IPR010658	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: your sequence is shorter than subject: 303 - 626

Fln protein: NVAIFLMGCAFWRQDDSLVNRVQCTAQILILVSPLWIAWKLTARKMLMRSSVDEALITDGSQGECKGESEICQTGQPADLNDANDKSLSGALCSLNFMLVLFTSAIALGSGFVALNSMNQVATALGYLEGEVSIFVSLISIWQFIGRFGGGVFSDYLLYRFRIARPLVTAIAALVLSCGYVLVAFPFSGSLYVASIVIGLSVGANWCLNPTTVSELFDLRHFGTLYNFVLVGNPLVSYVLSVWVAGYLYDAEAERQDLQGKCKGNKCFNLTFLILSAACMSAAMASFFLWIRTRNFYKMIHT*

Protein Length: 304

Fln nts: AATGTAGCAATATTTTTGATGGGGTGTGCGTTTTGGAGACAGGATGACTCGCTGGTGAATCGAGTGCAATGCACTGCACAAATTTTGATTCTGGTATCGCCATTGTGGATCGCTTGGAAATTAACAGCGAGAAAGATGTTAATGAGGTCTTCTGTAGATGAGGCGCTTATCACCGATGGGTCTCAGGGAGAATGCAAAGGCGAAAGTGAAATATGCCAGACCGGGCAGCCCGCTGATCTTAACGATGCAAATGATAAATCGCTTTCAGGTGCGTTGTGCAGTCTTAATTTCATGTTGGTGTTATTTACTTCTGCGATAGCGTTAGGGTCTGGATTTGTGGCATTGAACAGTATGAACCAGGTAGCAACTGCCCTTGGGTATCTGGAAGGCGAGGTAAGCATATTCGTCAGCCTCATATCGATATGGCAATTCATAGGGCGCTTCGGCGGGGGTGTGTTTTCTGATTATTTACTCTACCGATTTAGAATAGCAAGGCCATTGGTGACAGCGATAGCTGCATTGGTTCTATCGTGTGGATATGTGCTAGTAGCCTTTCCTTTCTCTGGAAGTCTGTACGTGGCATCCATTGTTATAGGGCTTTCAGTTGGAGCAAACTGGTGTTTGAATCCCACTACAGTTTCTGAGCTCTTTGATCTTCGCCATTTTGGGACTCTCTACAACTTTGTGCTAGTGGGGAATCCTCTTGTATCGTATGTGCTCTCTGTGTGGGTGGCTGGATATTTATATGACGCAGAGGCCGAGAGGCAAGATCTGCAGGGGAAATGTAAGGGAAACAAATGCTTCAATCTCACCTTCCTGATCTTGTCAGCGGCCTGTATGTCAGCAGCAATGGCGTCCTTTTTCCTGTGGATCAGAACCAGGAATTTTTATAAAATGATTCACACTTGA___TCACAAGAGCCTATTTGTAACCAACCGTAAAGACAAATTTATGGATTTAGTATGACACAAGGGATAATGGTGTATAT

Fln Alignment:

Contig16629___DKSLSGALCSLNFMLVLFTSAIALGSGFVALNSMNQVATALGYLEGEVSIFVSLISIWQFIGRFGGGVFSDYLLYRFRIARPLVTAIAALVLSCGYVLVAFPFSGSLYVASIVIGLSVGANWCLNPTTVSELFDLRHFGTLYNFVLVGNPLVSYVLSVWVAGYLYDAEAERQ--------------------DLQGKCKGNKCFNLTFLILXXXXXXXXXXXFFLWIRTRNFYKMIH
B8LRH5_______________DHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGFVD--VSMFVSLISIWGFFGRIGAGSISEHFIRKAGVPRPVWMAASQLFMIVGYIFMAIGMPGSLYLGSIVVGVCYGVRLSISVPTASELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSHKVNARPYPVLLSGIYPSELEDSNNCVGAHCYRLVFLVMAGVCLLGFGLDVLLSFRTRNLYSNIH

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
231		66	33		0.997452
233		66		33	0.997452
523	20		80		0.999996
524		20		80	0.999996
525	20			80	0.999996
526		80		20	0.999996
720		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain