SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16616

Length: 831 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene16616 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SV05_RICCO	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	UDP-glucuronosyltransferase, putative	-	-	5.534e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Anthocyanidin 3-O-glucosyltransferase.	EC:2.4.1.115	-	8.206e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Anthocyanin biosynthesis	00942		8.206e-19	%
Sma3	Metabolic pathways	01100		8.206e-19	%
Sma3	Biosynthesis of secondary metabolites	01110		8.206e-19	%
Sma3	Indole-3-acetate beta-glucosyltransferase.	EC:2.4.1.121	-	4.426e-09	-

Source	Gene names
Sma3	At1g05670; At1g05680; CtGT4; F3F20.12; F3F20.13; GSVIVT00013562001; GSVIVT00015205001; GSVIVT00015207001; GSVIVT00015611001; GSVIVT00016231001; GSVIVT00016234001; GSVIVT00016236001; GSVIVT00016239001; GSVIVT00016241001; GSVIVT00016242001; GSVIVT0001624600

Source	GOs	Term	Type	Identity
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
337	50		50		1.0
338		50	50		1.0
339	25	75			0.996473
346	33		66		0.997452
358	33		66		0.997452
400			75	25	0.996473
415		80	20		0.995493
416	80			20	0.995493
424	20			80	0.995493
435	20	80			0.995493
494		33		66	0.997452
541		33	66		1.0
565			33	66	0.997452
597	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
686	698	CTC CTC CTC CTC C	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain