SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16585

Length: 417 nt

UniGene Fasta

>sp_v3.0_unigene16585
AATGTTTTCTTCTGACTGGGAAGGAGGCTGCAGCTTACATCTCGGTCGAGAAAATTGTATGGGAGCAAAACATGATGGATGTGTATGAAATTATTGGGCTTTTTTGTGAAATAGTGGTGGTTCACGTCCCTGTTATTGAAAAGCAGAGGGAGTGTCCTATGGATTTGAAAGAGTCAATAACCAGTTTAATTTTTGCTGCGCCTAGATGTTCTGATCTTCCAGAACTACTGCAGGTCCAAAATTTATTTTGTGCCAAGTATGGAAAGCAATTTGTTGCTGCTGCTACAGAACTACAACCAGATTGTGGTGTTAACCGAATGATCATTGGAAAACTTTCAGCTTGTGCTCCAACTGCTGAGGTGAAATCAAAGATAATGGAAAAGATAGCTGAAGAGCATCAAGTAGACTGGCATTCAT

Ace file of the UniGene sp_v3.0_unigene16585

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana] gb\|AAD39610.1\|AC007454_9 F23M19.10 [Arabidopsis thaliana] gb\|AEE31688.1\| Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]	-	-	9.99995e-41	60%
FL-Next	tr=Os08g0175200 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	61%

Source	Gene names
Sma3	AT4g35730; At1g25420; At1g34220; At2g19710; At4g35730; F23M19.10; F2J7.16; F8D20.240; GSVIVT00001776001; GSVIVT00010113001; GSVIVT00011578001; GSVIVT00011879001; GSVIVT00016603001; GSVIVT00030347001; OJ1134_B10.7; OSJNBa0038K02.20; OSJNBa0054L03.38; Os01g

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	0.0	-
Sma3	O-methyltransferase activity	GO:0008171	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	O-methyltransferase, family 3	IPR002935	-	0.0	-
Sma3	Domain of unknown function DUF292, eukaryotic	IPR005061	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G35730.1	Regulator of Vps4 activity in the MVB pathway protein chr4:16931111-16933241 FORWARD LENGTH=466	56%
RefSeq	Arabidopsis thaliana	NP_973961.1	Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002325569.1	predicted protein, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q6Z4T7

Fln msg: Distance to subject end: 372 aas, your sequence is shorter than subject: 138 - 561

Fln protein: CFLLTGKEAAAYISVEKIVWEQNMMDVYEIIGLFCEIVVVHVPVIEKQRECPMDLKESITSLIFAAPRCSDLPELLQVQNLFCAKYGKQFVAAATELQPDCGVNRMIIGKLSACAPTAEVKSKIMEKIAEEHQVDWHS

Protein Length: 139

Fln nts: AATGTTTTCTTCTGACTGGGAAGGAGGCTGCAGCTTACATCTCGGTCGAGAAAATTGTATGGGAGCAAAACATGATGGATGTGTATGAAATTATTGGGCTTTTTTGTGAAATAGTGGTGGTTCACGTCCCTGTTATTGAAAAGCAGAGGGAGTGTCCTATGGATTTGAAAGAGTCAATAACCAGTTTAATTTTTGCTGCGCCTAGATGTTCTGATCTTCCAGAACTACTGCAGGTCCAAAATTTATTTTGTGCCAAGTATGGAAAGCAATTTGTTGCTGCTGCTACAGAACTACAACCAGATTGTGGTGTTAACCGAATGATCATTGGAAAACTTTCAGCTTGTGCTCCAACTGCTGAGGTGAAATCAAAGATAATGGAAAAGATAGCTGAAGAGCATCAAGTAGACTGGCATTCAT

Fln Alignment:

Contig16585___LLTGKEAAAYISVEKIVWEQNMMDVYEIIGLFCEIVVVHVPVIEKQRECPMDLKESITSLIFAAPRCSDLPELLQVQNLFCAKYGKQFVAAATELQPDCGVNRMIIGKLSACAPTAEVKSKIMEKIAEEHQVDW
Q6Z4T7_______________LEAGQEATARIRVEHIIREENMMAAQEILELFCELIAVRLPIIETQKECPIDLKEAISSICFAAPRCADLPELMQVQMMFATKYGKEFVAAATELMPDCGVNRQIIELLSIRAPPVDVKMKLLKEIAEEHEIDW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain