SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16577

Length: 1096 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16577

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Cytochrome P450 77A3 gb\|AAB94593.1\| CYP77A3p [Glycine max]	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Putative cytochrome P450	-	-	2.682e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	3.816e-06	-
Sma3	Unspecific monooxygenase.	EC:1.14.14.1	-	9.123e-28	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	9.123e-28	%
Sma3	Steroid hormone biosynthesis	00140	9.123e-28	%
Sma3	Caffeine metabolism	00232	9.123e-28	%
Sma3	Tryptophan metabolism	00380	9.123e-28	%
Sma3	Arachidonic acid metabolism	00590	9.123e-28	%
Sma3	Linoleic acid metabolism	00591	9.123e-28	%
Sma3	Aminobenzoate degradation	00627	9.123e-28	%
Sma3	Retinol metabolism	00830	9.123e-28	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	9.123e-28	%
Sma3	Drug metabolism - cytochrome P450	00982	9.123e-28	%
Sma3	Drug metabolism - other enzymes	00983	9.123e-28	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	9.123e-28	%
Sma3	Metabolic pathways	01100	9.123e-28	%

Source	Gene names
Sma3	ACT11D09.3; At1g11600; At1g64900; At1g64930; At1g64940; At1g64950; At2g12190; At3g03470; At3g10560; At3g10570; At5g04630; At5g04660; B1051E10.40; CYP77A1; CYP77A2; CYP77A3; CYP77A3v2; CYP77B3; CYP77B4; CYP89; CYP89A11; CYP89A12; CYP89A13; CYP89A15v1; CYP8

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G64950.1	CYP89A5 cytochrome P450, family 89, subfamily A, polypeptide 5 chr1:24127587-24129119 FORWARD LENGTH=510	48%
RefSeq	Arabidopsis thaliana	NP_176675.1	cytochrome P450, family 89, subfamily A, polypeptide 5 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002311965.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLH0

Fln msg: your sequence is shorter than subject: 308 - 327

Fln protein: MCFGSKPDEEAVISIQDVMREVLLNGGGLDEALAILGFFNRRRRARREEIRHRQRETLLTLINQRRDAPSPAGGAYVDTLFNLRMDGGRSLNDDELVTLSFEFITGGNDTTTTSLQWLMANLVIRQDIQTRLYDEIVGVTGKGKLAEQNDLQRMPYLEAVVKETLRRHPPGHFVLSHAVTRPCELAGYKVPADAFVNFYVAGIGMDPRVWPNPSEFKPERFLDEGVEVDLTGTKEIKMMPFGAGRRVCPGLGMAMLHLNLIVARLVQEFVWECKPRETVDLSEKQEFTTVMKYPLQALIKQREKEDN*

Protein Length: 309

Fln nts: GGAACGGTGAGCGTGGTGGAGCAGCTTCGAAACGCGGTCTTTTGTATCCTCCTGTGG_-_ATGTGCTTCGGCAGCAAACCGGACGAGGAGGCGGTGATATCCATCCAGGACGTCATGCGAGAGGTCCTCCTCAACGGCGGAGGTCTGGACGAAGCCTTAGCCATTCTGGGGTTCTTCAACCGGCGGCGCCGGGCGCGGAGGGAGGAGATCCGTCATAGGCAGCGAGAAACTCTGCTCACACTCATAAACCAGCGCCGTGATGCACCCTCTCCGGCCGGCGGTGCGTACGTGGACACGCTGTTCAATCTGAGAATGGACGGCGGCCGCAGCCTCAACGACGACGAGCTCGTTACTCTCTCCTTCGAATTCATCACCGGCGGCAACGATACGACCACAACGTCTCTGCAGTGGTTGATGGCGAATCTGGTGATCCGTCAAGACATACAGACGAGATTATACGATGAGATCGTCGGCGTCACTGGCAAGGGGAAACTGGCGGAGCAAAACGACCTGCAGCGGATGCCTTATCTCGAGGCCGTGGTGAAGGAAACCCTGAGACGCCACCCTCCCGGGCACTTTGTACTCAGCCACGCCGTCACCCGGCCCTGCGAACTTGCCGGCTACAAAGTCCCCGCCGACGCGTTCGTCAATTTCTATGTGGCGGGCATAGGGATGGATCCCCGAGTGTGGCCAAACCCGTCGGAATTCAAGCCGGAGCGGTTTCTTGATGAGGGTGTGGAAGTGGATCTGACAGGGACAAAGGAGATAAAGATGATGCCGTTTGGCGCAGGGCGGAGGGTGTGTCCCGGATTAGGAATGGCTATGCTCCATTTAAATCTCATCGTCGCCCGTCTGGTTCAGGAATTCGTGTGGGAATGCAAGCCCAGGGAGACGGTAGATCTGTCTGAAAAGCAGGAATTCACTACGGTTATGAAATACCCTCTGCAGGCGCTCATAAAGCAGAGGGAGAAGGAAGATAATTAG___AGGTGGAAACTTGCGAGAGGTAACAGGTTCGATTCGTATTGTATTCTATACTGAATAAAATCATCAAAGCAATTGTCCTGTTACTGTGAAAATATAATTATTAATAATTATTAAA

Fln Alignment:

Contig16577___TLLTLINQRR---------DAPSPAGG-AYVDTLFNLRMDGGRSL-NDDELVTLSFEFITGGNDTTTTSLQWLMANLVIRQDIQTRLYDEIVGVTGKGKLAEQNDLQRMPYLEAVVKETLRRHPPGHFVLSHAVTRPCELAGYKVPADAFVNFYVAGIGMDPRVWPNPSEFKPERFLDEGVEVDLTGTKEIKMMPFGAGRRVCPGLGMAMLHLNLIVARLVQEFVWECKPRETVDLSEKQEFTTVMKYPLQALIKQREK
B8LLH0_______________SILPLVNTRRAVLKAGAHTQAGSPDGAHAYIDSLMNLELPEGRGKPTDEELVTLCSELLTAGTDTTSTALEWAMLRMVMHQDIQETLYQEICDVVGDRKV-EGKDIENLPYLNAVVKETLRRHPPGHFVLSHAVTQDCQLRGYDIPYKANVEFYTAWMSFDPKIWPDPMTFNPRRFLDPGNEVDITGNKQVKMMPFGVGRRICPALGLGTLHINLILARMVQEFHWSCRDGETPDISEKFAFTVIMKNPLQASIKKRSR

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
732	16			83	0.994512
765	83		16		0.994512
804		83		16	0.994512
819	14			85	0.993533
882		81		18	0.999994
883	81		18		0.999994
900	18		81		0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain