SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16559

Length: 1011 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene16559 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 monooxygenase CYP736B n=3 Tax=Vitis RepID=C0KLZ0_9ROSI	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Cytochrome P450	-	-	3.821e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	7.981e-12	-
Sma3	Flavonoid 3',5'-hydroxylase.	EC:1.14.13.88	-	2.084e-13	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	2.084e-13	%
Sma3	Flavone and flavonol biosynthesis	00944	2.084e-13	%
Sma3	Biosynthesis of secondary metabolites	01110	2.084e-13	%

Source	Gene names
Sma3	Ald5H; Asp-3; At3g26300; At4g36220; B1097H10.9; B1144B06.25; BNF5H1; BNF5H2; BNF5H3; CAld5H/F5H1\|CYP84A10; CAld5H/F5H4; CYP71A1; CYP71A2; CYP71A5; CYP71A8; CYP71A9; CYP71AN1; CYP71AN2v1; CYP71AN3; CYP71AP2v1; CYP71AP3; CYP71AP4; CYP71AS13; CYP71B34; CYP71

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Hemocyanin, copper-type	IPR000896	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002310008.1	cytochrome P450 [Populus trichocarpa]	0.0	51%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQT4

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 337 - 528

Fln protein: KCCAAGEAANVSKLVSTMTTDIICRMAFGKKYCEEDLDSRGFKDMIKEVFFLSGAINIGDFIPWLEWLDLQGLRRRQKSCHNTFDAFFEMVIEEHMKKNKDDSSDKKDFVDVMLGLMDNNDMEVKITRDNIKAVIFDMLGAGTDTSSATLEWAMSEMLLNPSMMRKVQEELESVVGVDRRVEEWDLPRLPYLKAVVKETLRLHPPGPLLIPHESFNDCTVGGYFIPRKSRLIVNVWALARDPKSWEDADVFKPERFVGSPIDIKGQHFQMLPFGSGRRGCPGQPLALTVVEYTLASLLHCFDWKLPAGMKPGDLDMTEEFGLSTPRSVHLVAVPTLR

Protein Length: 338

Fln nts: AAGTGCTGCGCGGCGGGTGAGGCGGCGAACGTGAGCAAGCTGGTGTCCACCATGACAACGGATATCATATGCAGGATGGCCTTCGGCAAGAAGTACTGCGAGGAGGACCTGGACAGCAGAGGGTTCAAGGACATGATAAAGGAGGTCTTCTTTCTCAGCGGTGCCATTAATATTGGGGACTTCATTCCATGGTTGGAGTGGTTGGATCTGCAAGGCCTCCGCCGCCGACAGAAGAGCTGCCATAACACCTTTGATGCTTTCTTCGAGATGGTTATAGAGGAGCACATGAAGAAGAACAAGGACGATAGTTCTGATAAGAAGGATTTCGTGGATGTGATGTTGGGACTCATGGATAACAATGATATGGAGGTCAAGATCACTCGAGACAACATCAAGGCAGTCATCTTTGATATGCTGGGAGCGGGAACAGACACTTCCTCTGCGACGTTAGAGTGGGCGATGTCTGAAATGCTACTAAATCCTTCAATGATGAGGAAAGTACAAGAGGAGTTGGAGAGCGTGGTGGGAGTCGATCGCAGGGTGGAAGAATGGGATCTTCCCCGTCTGCCATACTTAAAAGCAGTGGTGAAGGAGACGCTGAGGCTTCATCCACCGGGGCCATTGCTTATCCCACATGAGTCCTTCAACGATTGCACCGTCGGCGGCTATTTTATACCCAGAAAATCTCGTCTTATAGTGAACGTGTGGGCCCTCGCAAGGGACCCCAAATCATGGGAAGATGCTGACGTGTTCAAGCCGGAGAGATTTGTTGGCAGCCCCATTGACATCAAGGGGCAACATTTCCAGATGCTTCCTTTTGGGTCAGGCAGGAGAGGCTGCCCCGGGCAACCCCTGGCGCTAACCGTTGTGGAATATACCTTGGCCAGTCTTTTGCATTGTTTTGATTGGAAGCTGCCCGCTGGAATGAAACCCGGGGATTTGGATATGACCGAGGAATTTGGGCTGTCCACACCACGGTCAGTTCATCTGGTTGCGGTCCCCACTCTCAGG

Fln Alignment:

Contig16559___KCC-AAGEAANVSKLVSTMTTDIICRMAFGKKYCEEDL-DSRGFKDMIKEVFFLSGAINIGDFIPWLEWLDLQGLRRRQKSCHNTFDAFFEMVIEEHMXXXXXXXXXXXXXXXVMLGLMDNNDMEVKITRDNIKAVIFDMLGAGTDTSSATLEWAMSEMLLNPSMMRKVQEELESVVGVDRRVEEWDLPRLPYLKAVVKETLRLHPPGPLLIPHESFNDCTVGGYFIPRKSRLIVNVWALARDPKSWEDADVFKPERFVGSP---IDIKGQHFQMLPFGSGRRGCPGQPLALTVVEYTLASLLHCFDWKLPAGMKPGDLDMTEEFGLSTPRSVHLVAVPTLR
C0PQT4_______________KCARVSNPVVDVSKTVLAVAVDIICRMAFGRKYSDEEAYDNRGFEEMIKEFGFLLGAFDIGDFIPYLGWMDLQGLGRRQKAISRTADAFYEKLIEEHLAQKDVRETRDFVDV--LLALSEHN-----IRRDNIKAILIDMLHAGSDAPSTALEWAMSELLRRPLVMTKAQEELEKVVGLNRKVRESDLPHLPYLQAVVKETLRLYPSAPLLAPHESMESCTVCDYEIPARTRVIVNAWAIGRDPKSWEDAEEFKPERFTESPSSCVDVRGQDFELIPFGSGRRGCPGMQLGMVIVEFVLAQLLHCLDWRLPAEIQGRDLDMTENFGLAIPRAVPLLAIPTPR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
365		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain