SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16539

Length: 1269 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16539

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9SGM2_RICCO	-	-	4.0e-27	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Hydrolase, hydrolyzing O-glycosyl compounds, putative	-	-	1.337e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	4.887e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		4.887e-06	%

Source	Gene names
Sma3	AT4g13600; AT4g26830; At1g29380; At2g05790; At4g26830; At5g67460; B1158C05.10; F10M23.170; F15D2.1; GSVIVT00018697001; GSVIVT00019655001; GSVIVT00022526001; GSVIVT00025946001; GSVIVT00027269001; GSVIVT00028380001; GSVIVT00031673001; GSVIVT00032980001; Glu

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	autophagy	GO:0006914	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Peptidase C54	IPR005078	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G58100.1	PDCB5 plasmodesmata callose-binding protein 5 chr3:21515397-21516329 REVERSE LENGTH=180	4.0e-30	58%
RefSeq	Arabidopsis thaliana	NP_567060.1	glucan endo-1,3-beta-glucosidase-like protein 1 [Arabidopsis thaliana]	5.0e-30	58%
RefSeq	Populus trichocarpa	XP_002327206.1	predicted protein, partial [Populus trichocarpa]	1.0e-29	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZF3

Fln msg: Overlapping hits, possible frame ERROR between 400 and 397,

Fln protein: MATSAVAVALHALVLLLLCGFSFCSGSGKQKLYSSSRGNDTNLAAEEAxxxLGNDSSTTTPSTPITAGTTWCVAKNNVDDNTLQVALDYACGLGGADCTPIQQGGVCFDPDNVQAHASYAFNNYFVKNGMLPGTCDFGGSAAPTTLNPSYGKCTFQTSTGTSSITSSPGSSITGAMGPSTFNPNDAAFMAPSLVISSIITILYISATL*

Protein Length: 210

Fln nts: ATGGGGGAGGAGGGGCCGGTTGCAAAGGGAGCGTTGAATGCCAGGTAGCGAATACCATCTCTTCCTTCCTGAAACCACCAGGGTCCATTGTGATGTGAATGTGTTTATTTCGGAACCGTGGAAAAGGGTGGGTGATGATATAGAAAGCTAGAGCGAGAGCGGTATACAGTGCGTAGTGTGGTGAATATACATTGAGTATATATCATAACCCGCGGAAAGGAACCAAGCTAGTCTGGTAGTAAATTAGAGA_-_ATGGCAACGAGTGCAGTGGCGGTTGCTCTCCATGCCCTCGTTCTTCTACTGCTTTGTGGATTCTCTTTTTGCTCAGGTTCTGGGAAGCAGAAGCTATATAGCAGTAGCAGGGGAAACGACACCAACCTGGCAGCTGAGGAAGCTxxxxxxxxxTTAGGCAATGATTCATCTACAACAACTCCTTCGACTCCCATAACCGCAGGCACCACCTGGTGCGTGGCTAAGAACAATGTGGATGACAACACGTTGCAGGTGGCACTGGACTACGCTTGTGGCCTCGGAGGCGCCGATTGCACTCCAATACAACAAGGTGGAGTGTGCTTTGATCCCGATAATGTGCAGGCCCATGCTTCCTACGCCTTCAACAACTATTTTGTTAAGAATGGGATGCTGCCAGGCACTTGTGACTTCGGCGGGAGTGCAGCTCCGACTACCCTTAATCCAAGTTACGGGAAGTGCACTTTCCAGACAAGTACTGGAACCTCCTCCATTACATCATCACCAGGCAGTTCAATAACAGGAGCGATGGGACCCAGCACATTCAACCCGAACGACGCTGCATTCATGGCTCCGTCCCTTGTCATATCATCCATTATAACAATATTATATATCTCTGCCACTCTGTAA___TGTGTGGGTTTATTAAATGAGAGTCGTCATCTGAATGCATCAAATGGTGTAATATTCTTAGTAGGTATAGCCTCCCTTATGTTTCTTTCGAATATTGGAGGATAGCTCCCTTATGTTTTTTAATGTATACCAACTGCTTTGCATAGCGTGTATCCATCCCTATTTCCTATTCAAGGGATTTGATGAACCAGGCTAGGTGTGCAACGCGAGATTTAAACGGCAGGGTTTACAGTCATCGTCTCGGCTACTGTAATTTTAGATGGATTTTATATTTCAGACTTGGAGGCGTATTGTTTCCCTAAAATTTTGTACAAGTACCAGAAACCAAACATAAGGAGTCGTTTAGCATATATTTGATATATATATTTGTCGCTTCCATTGGTTGCTGTGCTG

Fln Alignment:

Contig16539___CGFSFCS-GSGKQKLYSSSRGNDTNLAAEEASxFLGNDXXXXXXXXXXXXXXXWCVAKNNVDDNTLQVALDYACGLGGADCTPIQQGGVCFDPDNVQAHASYAFNNYFVKNGMLPGTCDFGGSAAPTTLNPSYGKCTFQXXXXXXXXXXXXXXXXXXAMGPSTFNPNDAAFMAPSLVISSIITILYISATL
A9NZF3_______________CGLSSCSAGFGKQKLYSGSRGNDTNLAAEEASxFLGNDSSTPTPSTPTSAGTTWCVAKNNVGDSTLQVALDYACGLGGADCTAIQQGGVCFDPDNVQAHASYAFNSYYVKNGMLPGTCDFAGSAAPTTNNPSFGKCMFETSTGSSSITSSTGGSITGAMGPSTFNPNGATFMVPPLLIS---TIIYISATV

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
27	80		20		0.995493
28	80		20		0.995493
79	80		20		0.995493
84			80	20	0.995493
119		75		25	0.996473
269			66	33	0.997452
911	14			85	0.993533
912		14	85		0.993533
914	85			14	0.993533
942	80		20		0.995493
951		60	40		1.0
1038	11	88			0.923564
1083	90		10		0.90298
1171		42		42	1.0
1226	25		75		0.996473
1227		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain