SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16508

Length: 936 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16508

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	wall-associated receptor kinase-like 20 [Arabidopsis thaliana] sp\|Q9LZM4.1\|WAKLQ_ARATH RecName: Full=Wall-associated receptor kinase-like 20; Flags: Precursor emb\|CAB82980.1\| putative protein kinase [Arabidopsis thaliana] gb\|AED90428.1\| wall-associated re	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Putative wall-associated kinase 4	-	-	1.456e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	2.507e-09	-

Source	Gene names
Sma3	At1g16110; At1g16120; At1g16130; At1g16140; At1g16150; At1g16160; At1g16260; At1g17910; At1g19390; At1g21210; At1g21230; At1g21240; At1g21250; At1g21270; At1g69730; At1g79670; At1g79680; At2g23450; At3g25490; At3g53840; At4g31100; At4g31110; At5g02070; At

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	proton-transporting ATP synthase complex, catalytic core F(1)	GO:0045261	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	-
Sma3	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cell surface receptor signaling pathway	GO:0007166	Biological Process	-
Sma3	oligosaccharide metabolic process	GO:0009311	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	cellular water homeostasis	GO:0009992	Biological Process	-
Sma3	response to zinc ion	GO:0010043	Biological Process	-
Sma3	response to nickel cation	GO:0010045	Biological Process	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	ATPase, F1 complex, delta/epsilon subunit	IPR001469	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	EGF-like calcium-binding	IPR001881	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	EGF-like domain	IPR006209	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013091	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Wall-associated kinase	IPR013695	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G02070.1	Protein kinase family protein chr5:405895-408220 REVERSE LENGTH=657	59%
RefSeq	Arabidopsis thaliana	NP_195827.1	wall-associated receptor kinase-like 20 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002308179.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 123 aas, your sequence is shorter than subject: 311 - 656

Fln protein: LQECV*PLQ*QYLR*SYTEEKGCRCRLKLN*MRERADILSTNSGGKAAELFTSKEMKKATNGFAKDRILGIGGFGEVYKGIEQVLNEVRILSQVNHRNLVRLLGCCVDAQEPLLVYEYIPNGTLFDHLHMISGGKFLGWRTRLNIALHTAEALTYLHSAAFPPIYHRDVKSTNILLDSKLNAKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKTINLSRESDDVNPAVYVINISEQGRIMDVFDPRLKENASQLFWKHEGSGAFSDELFAGEEAREAHYEPL

Protein Length: 312

Fln nts: GTTGCAGGAATGTGTGTAGCCATTGCAGTAGCAGTACTTGCGATAATCCTATACAGAAGAAAAAGGGTGCAGATGCAGGCTCAAGCTCAACTAAATGAGGGAGAGGGCAGACATATTATCAACAAACAGCGGAGGAAAGGCCGCCGAACTCTTCACCAGCAAAGAGATGAAAAAGGCAACAAATGGATTTGCAAAGGACCGAATCCTCGGGATTGGGGGTTTCGGAGAAGTTTACAAAGGAATCGAACAGGTTCTGAACGAGGTTCGGATTCTATCTCAGGTAAACCACAGAAATCTGGTTCGACTGTTGGGCTGCTGTGTTGATGCGCAGGAACCGCTCCTGGTGTATGAGTACATTCCCAACGGGACCTTATTCGATCATCTCCACATGATCTCCGGAGGAAAGTTCCTGGGCTGGAGAACGCGCTTGAATATTGCTCTCCACACTGCGGAAGCTCTGACTTATCTCCATTCCGCTGCCTTCCCTCCAATATATCACAGAGATGTGAAGTCCACAAACATTTTACTTGACAGTAAATTGAATGCCAAAGTTTCAGATTTTGGGCTATCACGTCTAGCGGAAACGGACCTGTCTCACATCTCCACATGCGCCCAAGGGACGCTGGGGTATTTGGATCCCGAGTATTACAGAAATTACCAGCTCACTGATAAAAGTGATGTGTATAGCTTCGGCGTGGTTTTGCTGGAACTGCTAACATCGCAGAAGACCATTAATCTCAGCAGGGAATCTGATGATGTAAATCCGGCAGTCTATGTGATTAATATATCGGAACAGGGAAGGATCATGGATGTTTTCGATCCTCGGTTGAAGGAGAACGCTTCGCAGCTATTCTGGAAGCATGAAGGCAGTGGCGCTTTTAGCGATGAGTTGTTTGCAGGAGAGGAGGCAAGAGAGGCCCACTATGAACCTCTACC

Fln Alignment:

Contig16508___FTSKEMKKATNGFAKDRILGIGGFGEVYKGI--------------------EQVLNEVRILSQVNHRNLVRLLGCCVDAQEPLLVYEYIPNGTLFDHLHMISGGKFLGWRTRLNIALHTAEALTYLHSAAFPPIYHRDVKSTNILLDSKLNAKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKTINLS---RESDDVNPA-VYVINISEQGRIMDVFDPRLKEN
C0PRI9_______________FTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHG-KGQPNMEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKLASEDFTHVSTRVMGTFGYLAPEYASSGKLTDRSDVFSFGVMLLELITGRRPVDTTPSFAEDSLVDWARPLLARAMEDGNLDALVDPRIQNN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain