SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16469

Length: 2271 nt

UniGene Fasta

>sp_v3.0_unigene16469
AGGCAGAGGCGGAGGAGCAGAAGGAGGAGGATACAAGTTAGTGCTTTCATTGCAGGGTCTTCAACTCAACTGTTAGTTATTAATGGGTGATTCGGCGCCTTTTTTCTCGGCTAGCTTGCTGTCGGATGCCTGGAAGTTATCCGGCAGCATTTACAGAACTGGCCACGAGAGTCGTCAGCTATCTGAGGGACGTCAATAGGGGATAAAGTTGTTTATGCTTTCCGTGGCTCTTTTGATCCTAATTTATTCACATCCACAGCAACCAAATATGGAGAATATCAAATTCAGCCGCAGGATCATATTGGTTTTCTTGACGGCTTGAAAGATGGGAATGACCAGAGAGCCTCCGTTCACCGGGGCGCTCTCAACCAGTTTCTGGACATTTGGAACAAATCCGGCGTCCAAACACAGGTCGGAGAAGATTGTAAGAGGGGGGCTACCATTGTGTTTACCGGCCACTCCACCGGGGGGGCTATTGCTGCGTTGGCCACTTTATGGGTGTTGGAGAAGCAAGGGCAGCCTGGTCCGTCCAAAGCGGTATTCTGCATCACGTTTGGGTTCCCTTTGATTGGTGATGAAATTCTGGCACGAGCAGTTCGTCGCAAAAAGTGGGCAGATCGGTTCTGCCATGTTGTTTCCAGGCGTGATATCTTCTCTAGAATATTACTGGCTCCGTCCATATCTGTTTCTAGGCATTTAGAAACACAGTTTCCCTATTGGAAGAGATCTATGCAGAATTCGGCCGATTCCCTGGGTTCCACTGACACACCAATGGCGGAAGCTCCCCCAGGGGGAACTGCTGAGTTTGTTGGCACTGTAGTTCAGCATTGTTCTGCTGTAGCCAATTACACCAGTGCAGCCAAAATGAGTCCCAACAACCCCTTGATAGCTGCTGTGAAGCCTCTTGTAAAGCTAAGTCCTTATAGGCCATTTGGGCATTTTCTGTTCTGCTCAAGCAGTGGGGGAGTCTGGATAGAAAATCATTATGCTGTGTTGCCCGTCCTCTATTACGCCGCTCAAACCTTAGGTGCTAATTTAGAGGACTTCATCTTGGAACACTCTGGTTATGGCCACATCTTACCCAAAGCTCTGTTAAACATAGTGAAGTTGGGGGAAGAAAAGCTTTCAAATCTTCCTTTGACAGATGCTGCTTATCAAGATAGGGAGTTAGCAACACAACTAGATGCTCTTGGCCTTGGAATTCAGAATTGCCAAGCAAGACTTTCCCTGAGAGCAGCAGGACAAGTTCTGAAGCAGCAGATCGAGAACGTGTCCAATTTGAAGATGGAATACCCCAAAAAGATGGAAACCCCCATGGCAAATCTAGAAGAATATCGCCTGCAATGTCGGGGAAATGAGACTGGATACTATGATGCTTTCAAAAAGAAGCAACGGGGTAATGTGGACTTCCAGGCGAATCTGAAGAGGCTGGAGCTTGCAGGCTGGTGGGACGAGATCATACAGAACAAGTTCGATAAGGACGAATTACCCGATGATTTCCAGTGCAGGAAAGAGTGGATAATATGGGGCACTCACTACAGGCTACTTGTGGAGCCCCTGGACATCGCTAATTATTACAGATTGGGCAAGAATGAGGACTCAGGACCGTACCTCACTCATGGAAGGCCTCGTCGTTACAAAACTCTTGAAAAGTGGTTGGAAGGCAATGAAGAGATTCAGCATCTGGAACTACCCACGATGCTCACTCAGGACTCCCGCATCTGGGCTTTTGTTGAAGAAATTGCATCCTTGAAGAGTAAAAACAGTTATAATGATGAAAAAAGGATAGAATTGGAGAATCGAGTGGGGCGTTTGATTCAATCCAATGGTTTGTGCAAAGAAGATCTTTGGACGGGTGAATCCACCTTCAAAGCAGTTGTCGAATGGTTGTGGACGAATATGGCTCCAGCGCAGCAAGCATCATCTCCCTTCCGCTTTATTCTGCAAAACACCTAGAATTGATTAAAGAAGGTTGCCTAGTTGGGTAGGTTTCAATTATATGTGTAGCAGTCTGGGCTTTTGTTCCATTTTCATCTAGTTTTCCCTCATATTTATGCATTGTAGCACCTGCGCTTTTGTTTCATTTTCATTAATTTTTCCCTCGTATTTACGCATTGTTGCACCCCTTAGTCTTCTCCTCATTTTAAAAGTACTGATTTGATTTCAGTAGTTTCATGTATATTGGCTAGCTAGTTATATAAACATTTGTATTTCCTTGTGTCCATCTGTAAATTCTTCTATGATTATATAAGCATATTTCTTTCGGTGGTT

Ace file of the UniGene sp_v3.0_unigene16469

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	enhanced disease susceptibility 1 protein [Solanum tuberosum]	-	-	0.0	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%

Source	Gene names
Sma3	EDR1;

Source	GOs	Term	Type	e value	Identity
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9S3

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 590 - 633

Fln protein: GTSIGDKVVYAFRGSFDPNLFTSTATKYGEYQIQPQDHIGFLDGLKDGNDQRASVHRGALNQFLDIWNKSGVQTQVGEDCKRGATIVFTGHSTGGAIAALATLWVLEKQGQPGPSKAVFCITFGFPLIGDEILARAVRRKKWADRFCHVVSRRDIFSRILLAPSISVSRHLETQFPYWKRSMQNSADSLGSTDTPMAEAPPGGTAEFVGTVVQHCSAVANYTSAAKMSPNNPLIAAVKPLVKLSPYRPFGHFLFCSSSGGVWIENHYAVLPVLYYAAQTLGANLEDFILEHSGYGHILPKALLNIVKLGEEKLSNLPLTDAAYQDRELATQLDALGLGIQNCQARLSLRAAGQVLKQQIENVSNLKMEYPKKMETPMANLEEYRLQCRGNETGYYDAFKKKQRGNVDFQANLKRLELAGWWDEIIQNKFDKDELPDDFQCRKEWIIWGTHYRLLVEPLDIANYYRLGKNEDSGPYLTHGRPRRYKTLEKWLEGNEEIQHLELPTMLTQDSRIWAFVEEIASLKSKNSYNDEKRIELENRVGRLIQSNGLCKEDLWTGESTFKAVVEWLWTNMAPAQQASSPFRFILQNT*

Protein Length: 591

Fln nts: AGGCAGAGGCGGAGGAGCAGAAGGAGGAGGATACAAGTTAGTGCTTTCATTGCAGGGTCTTCAACTCAACTGTTAGTTATTAATGGGTGATTCGGCGCCTTTTTTCTCGGCTAGCTTGCTGTCGGATGCCTGGAAGTTATCCGGCAGCATTTACAGAACTGGCCACGAGAGTCGTCAGCTATCTGAGGGACGTCAATAGGGGATAAAGTTGTTTATGCTTTCCGTGGCTCTTTTGATCCTAATTTATTCACATCCACAGCAACCAAATATGGAGAATATCAAATTCAGCCGCAGGATCATATTGGTTTTCTTGACGGCTTGAAAGATGGGAATGACCAGAGAGCCTCCGTTCACCGGGGCGCTCTCAACCAGTTTCTGGACATTTGGAACAAATCCGGCGTCCAAACACAGGTCGGAGAAGATTGTAAGAGGGGGGCTACCATTGTGTTTACCGGCCACTCCACCGGGGGGGCTATTGCTGCGTTGGCCACTTTATGGGTGTTGGAGAAGCAAGGGCAGCCTGGTCCGTCCAAAGCGGTATTCTGCATCACGTTTGGGTTCCCTTTGATTGGTGATGAAATTCTGGCACGAGCAGTTCGTCGCAAAAAGTGGGCAGATCGGTTCTGCCATGTTGTTTCCAGGCGTGATATCTTCTCTAGAATATTACTGGCTCCGTCCATATCTGTTTCTAGGCATTTAGAAACACAGTTTCCCTATTGGAAGAGATCTATGCAGAATTCGGCCGATTCCCTGGGTTCCACTGACACACCAATGGCGGAAGCTCCCCCAGGGGGAACTGCTGAGTTTGTTGGCACTGTAGTTCAGCATTGTTCTGCTGTAGCCAATTACACCAGTGCAGCCAAAATGAGTCCCAACAACCCCTTGATAGCTGCTGTGAAGCCTCTTGTAAAGCTAAGTCCTTATAGGCCATTTGGGCATTTTCTGTTCTGCTCAAGCAGTGGGGGAGTCTGGATAGAAAATCATTATGCTGTGTTGCCCGTCCTCTATTACGCCGCTCAAACCTTAGGTGCTAATTTAGAGGACTTCATCTTGGAACACTCTGGTTATGGCCACATCTTACCCAAAGCTCTGTTAAACATAGTGAAGTTGGGGGAAGAAAAGCTTTCAAATCTTCCTTTGACAGATGCTGCTTATCAAGATAGGGAGTTAGCAACACAACTAGATGCTCTTGGCCTTGGAATTCAGAATTGCCAAGCAAGACTTTCCCTGAGAGCAGCAGGACAAGTTCTGAAGCAGCAGATCGAGAACGTGTCCAATTTGAAGATGGAATACCCCAAAAAGATGGAAACCCCCATGGCAAATCTAGAAGAATATCGCCTGCAATGTCGGGGAAATGAGACTGGATACTATGATGCTTTCAAAAAGAAGCAACGGGGTAATGTGGACTTCCAGGCGAATCTGAAGAGGCTGGAGCTTGCAGGCTGGTGGGACGAGATCATACAGAACAAGTTCGATAAGGACGAATTACCCGATGATTTCCAGTGCAGGAAAGAGTGGATAATATGGGGCACTCACTACAGGCTACTTGTGGAGCCCCTGGACATCGCTAATTATTACAGATTGGGCAAGAATGAGGACTCAGGACCGTACCTCACTCATGGAAGGCCTCGTCGTTACAAAACTCTTGAAAAGTGGTTGGAAGGCAATGAAGAGATTCAGCATCTGGAACTACCCACGATGCTCACTCAGGACTCCCGCATCTGGGCTTTTGTTGAAGAAATTGCATCCTTGAAGAGTAAAAACAGTTATAATGATGAAAAAAGGATAGAATTGGAGAATCGAGTGGGGCGTTTGATTCAATCCAATGGTTTGTGCAAAGAAGATCTTTGGACGGGTGAATCCACCTTCAAAGCAGTTGTCGAATGGTTGTGGACGAATATGGCTCCAGCGCAGCAAGCATCATCTCCCTTCCGCTTTATTCTGCAAAACACCTAG___AATTGATTAAAGAAGGTTGCCTAGTTGGGTAGGTTTCAATTATATGTGTAGCAGTCTGGGCTTTTGTTCCATTTTCATCTAGTTTTCCCTCATATTTATGCATTGTAGCACCTGCGCTTTTGTTTCATTTTCATTAATTTTTCCCTCGTATTTACGCATTGTTGCACCCCTTAGTCTTCTCCTCATTTTAAAAGTACTGATTTGATTTCAGTAGTTTCATGTATATTGGCTAGCTAGTTATATAAACATTTGTATTTCCTTGTGTCCATCTGTAAATTCTTCTATGATTATATAAGCATATTTCTTTCGGTGGTT

Fln Alignment:

Contig16469___TSIGDKVVYAFRGSFDPNLFTSTATKYGEYQIQPQDHIGFLDGLKDGNDQRASVHRGALNQFLDIWNKSGVQTQVGEDCKRGATIVFTGHSTGGAIAALATLWVLEKQGQPGPSKAVFCITFGFPLIGDEILARAVRRKKWADRFCHVVSRRDIFSRILLAPSISVSRHLETQFPYWKRSMQNSADSLGSTDTPMAEAPPGGTAEFVGTVVQHCSAVANYTSAAKMSPNNPLIAAVKPLVKLSPYRPFGHFLFCSSSGGVWIENHYAVLPVLYYAAQTLGANLEDFILEHSGYGHILPKALLNIVKLGEEKLSNLPLTDAAYQDRELATQLDALGLGIQNCQARLSLRAAGQVLKQQIENVSNLKMEYPKKMETPMANLEEYRLQCRGNETGYYDAFKKKQRGNVDFQANLKRLELAGWWDEIIQNKFDKDELPDDFQCRKEWIIWGTHYRLLVEPLDIANYYRLGKNEDSGPYLTHGRPRRYKTLEKWLEGNEEIQHLE-LPTMLTQDSRIWAFVEEIASLKSKNSYNDEKRIELENRVGRLIQSNGLCKEDLWTGESTFKAVVEWLWTNMAPAQQASSPFRFIL
D5A9S3_______________TDIGNTVVFAFRGSLDPQVVTSATTKYGECHIHDID---CLEWMKDGNNQPASVHKGAFSQFLDIWNNSPLQEEAGLDCERGKTVVFTGHSMGGAIASLATLCMLDKQLQPGKPKSIFCITFGFPLIGDEVVARAVRRKRWADQFCHVVLGRDAFSRILLAPCISVRKPLEALLPYLKRSMQSAGDSMGSTDTPMEEALPEGIAEFVGTVIQHCSAVVNYSSAAKMSPNNPSIAVVKSLVKLSPYRPFGHYVFCSRTGGISIENHFAVLPILYYALQTSDVNSEQFILEHVGYNHILPNALQNIVKL--QELSDLPLSDA---DSRIATQMDPLGLGIQNCQARLSLSAAGQLQKQQRENVSKLEDEYQAKMEIPMNILEDYRSLCIRDGSGYVDAFKKKERRDRDFQANLKRLELAGWWDEIILNKFDKDELPDDFQCSEEWIRRGTQYRLLVEPLDIANYYRLGKNEDSGIY---GRPSRYKTLQKWLEDNEENKQLQPPPAMLTQDSCLWAYVEENACLMDKNNYSDEKRIELENRVRPLIDSHGLCMEDFMTGESTFKMVVNWLWTHMSPAQQATSPFRSII

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2078		8		91	0.999766
2094	88			11	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain