SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16460

Length: 1680 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene16460 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 77A3 n=1 Tax=Glycine max RepID=C77A3_SOYBN	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Putative cytochrome P450	-	-	7.401e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	2.263e-06	-
Sma3	Unspecific monooxygenase.	EC:1.14.14.1	-	4.672e-23	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	4.672e-23	%
Sma3	Steroid hormone biosynthesis	00140	4.672e-23	%
Sma3	Caffeine metabolism	00232	4.672e-23	%
Sma3	Tryptophan metabolism	00380	4.672e-23	%
Sma3	Arachidonic acid metabolism	00590	4.672e-23	%
Sma3	Linoleic acid metabolism	00591	4.672e-23	%
Sma3	Aminobenzoate degradation	00627	4.672e-23	%
Sma3	Retinol metabolism	00830	4.672e-23	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	4.672e-23	%
Sma3	Drug metabolism - cytochrome P450	00982	4.672e-23	%
Sma3	Drug metabolism - other enzymes	00983	4.672e-23	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	4.672e-23	%
Sma3	Metabolic pathways	01100	4.672e-23	%

Source	Gene names
Sma3	ACT11D09.3; At1g11600; At1g64900; At1g64930; At1g64940; At1g64950; At2g12190; At3g03470; At3g10560; At3g10570; At5g04630; At5g04660; B1051E10.40; CYP77A1; CYP77A12; CYP77A2; CYP77A3; CYP77A3v2; CYP77B3; CYP77B4; CYP77B5; CYP89; CYP89A11; CYP89A12; CYP89A1

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002311965.1	predicted protein [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLH0

Fln msg: your sequence is longer than subject: 499 - 327

Fln protein: MAILSFLQAVLLLVISLFFFRLVLWKIWRYRNLPPGPPAWPILGNLLQMGFASGAFESSVQKFHERYGPIFTVWVGSRPLLMIACRDLAHEALIQKGSLFSDRPPATGMRKIFTSNQHNINSAAYGPLWRSLRRNLVSEALNPSAMKAFGEVREWGIGRLVEKLKNEAARNGGVVSVVEPFRNAVFCILLWMCFGSKPDEETVTSVQGVMREVLLTGVGLDEALPIPAFFYRRRRARMLEIRQRQRKTLLALINQRRDALPLAGGAYLDTLFNLTVEDGRSLHDDELGTLCSEFITAGTDTTTTALQWLMANLVIHQDIQTRLYGEIVRVTGKGKPAEQDDLQRMPYLEAVVKETLRRHPPGHFVLSHAVTRPCELAGYKVPADAFVNFYVAGIGMDPRVWPNPSEFKPERFLDEGVEVDLTGTKEIKMMPFGAGRRVCPGLGMAMLHLNLIVARLVQEFVWECKPGETVDLSEKQEFTTVMKYPLQALINQREKEDN*

Protein Length: 500

Fln nts: AGATCGCACAGGATACATTTTGGAGTTCTGTCATTAAAGTAAAGCCCTGCGCATATTTCAGACATTGCACCAAACCCTCGCATTCGAATTTCC_-_ATGGCGATTCTGTCGTTTCTCCAGGCTGTTCTGCTTCTCGTAATTTCCTTATTCTTCTTCCGACTGGTTCTCTGGAAGATCTGGCGCTACAGGAACCTGCCCCCCGGGCCCCCGGCATGGCCGATCCTAGGGAATCTCCTTCAGATGGGATTTGCCAGTGGCGCGTTCGAGAGCTCAGTGCAGAAATTCCATGAGAGATATGGCCCAATATTCACTGTGTGGGTCGGTTCCCGCCCTCTGCTGATGATCGCTTGCCGCGACCTTGCCCATGAGGCGCTCATACAGAAGGGCTCCCTCTTCTCTGACCGCCCGCCTGCCACCGGGATGCGGAAAATCTTCACCAGCAACCAGCACAACATCAATTCGGCTGCATACGGGCCGCTGTGGCGGAGCCTTCGCAGGAATCTGGTTAGCGAAGCCCTGAACCCTTCGGCGATGAAGGCGTTTGGGGAGGTGAGGGAATGGGGCATCGGCCGTCTGGTGGAAAAACTGAAGAACGAAGCGGCTCGCAACGGGGGAGTGGTGAGCGTGGTGGAGCCGTTTCGAAACGCGGTCTTCTGTATCCTCTTGTGGATGTGCTTCGGCAGCAAGCCGGACGAGGAGACGGTGACATCCGTCCAGGGCGTCATGCGGGAGGTCCTTCTGACTGGCGTAGGTCTGGACGAAGCCTTACCGATTCCGGCGTTCTTCTACCGGCGGCGTCGGGCACGGATGCTGGAGATTCGTCAGAGGCAGAGAAAAACCCTGCTCGCCCTCATAAACCAGCGCCGCGACGCGCTGCCTCTGGCAGGCGGCGCATACTTAGACACGCTGTTCAATCTGACAGTGGAGGACGGCCGAAGCCTCCACGACGACGAGCTTGGTACTCTCTGCTCTGAATTCATCACCGCCGGCACCGACACGACAACGACAGCCCTGCAATGGTTGATGGCGAATCTGGTAATTCATCAAGACATACAGACAAGATTATACGGCGAGATCGTCAGGGTCACTGGCAAGGGTAAACCGGCGGAGCAAGACGACCTGCAGCGGATGCCTTATCTCGAGGCCGTGGTGAAGGAAACCCTGAGACGCCACCCTCCCGGGCACTTTGTACTCAGCCACGCCGTCACCCGGCCCTGCGAACTTGCCGGCTACAAAGTCCCCGCCGACGCGTTCGTCAATTTCTATGTGGCGGGCATAGGGATGGATCCCCGAGTGTGGCCAAACCCGTCGGAATTCAAGCCGGAGCGGTTTCTTGATGAGGGTGTGGAAGTGGATCTGACAGGGACAAAGGAGATAAAGATGATGCCGTTTGGCGCAGGGCGGAGGGTGTGTCCCGGATTAGGAATGGCAATGCTCCATTTAAATCTCATCGTCGCCCGTCTGGTTCAGGAATTCGTGTGGGAATGCAAGCCTGGGGAGACGGTAGATCTATCTGAAAAGCAGGAATTCACTACGGTTATGAAATACCCTCTGCAGGCGCTCATAAATCAGAGGGAGAAGGAAGATAATTAG___AGTGGTGGAAACTTGCGAGAGGTAACAGGTTCGATTCGTATTGTATTCTATACTGAATAAAATCATCAAAGCAATTGTCCTGTTACTGTG

Fln Alignment:

Contig16460___FYRRRRARMLEIRQRQRKTLLALINQRRDAL----------PLAGGAYLDTLFNLTVEDGRSLH-DDELGTLCSEFIXXXXXXXXXALQWLMANLVIHQDIQTRLYGEIVRVTGKGKPAEQDDLQRMPYLEAVVKETLRRHPPGHFVLSHAVTRPCELAGYKVPADAFVNFYVAGIGMDPRVWPNPSEFKPERFLDEGVEVDLTGTKEIKMMPFGAGRRVCPGLGMAMLHLNLIVARLVQEFVWECKPGETVDLSEKQEFTTVMKYPLQALINQREK
B8LLH0_______________FFARQWKRIKELRRIQMDSILPLVNTRRAVLKAGAHTQAGSPDGAHAYIDSLMNLELPEGRGKPTDEELVTLCSELLTAGTDTTSTALEWAMLRMVMHQDIQETLYQEICDVVGDRK-VEGKDIENLPYLNAVVKETLRRHPPGHFVLSHAVTQDCQLRGYDIPYKANVEFYTAWMSFDPKIWPDPMTFNPRRFLDPGNEVDITGNKQVKMMPFGVGRRICPALGLGTLHINLILARMVQEFHWSCRDGETPDISEKFAFTVIMKNPLQASIKKRSR

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
1258	15	84			0.999986
1259		76		23	1.0
1268		16	83		0.999991
1269			16	83	0.999991
1312		88		11	0.923564
1318	77		22		0.999999
1321			88	11	0.923564
1327		11	77	11	0.968132
1330			33	55	1.0
1331		33		66	1.0
1332		22	66	11	0.999999
1334		37	62		1.0
1335	75			25	1.0
1336	75		25		1.0
1339	37		62		1.0
1342		75		25	1.0
1345		37	62		1.0
1350			57	42	1.0
1359	85		14		0.993533
1365		28	71		1.0
1369	14	85			0.993533
1371		14		85	0.993533
1372	14		85		0.993533
1383	14		85		0.993533
1385		85		14	0.993533
1386		85	14		0.993533
1387	57		42		1.0
1388		14		85	0.993533
1390			14	85	0.993533
1395	14	85			0.993533
1397			14	85	0.993533
1399			85	14	0.993533
1400	71	14			0.984337
1402		14		85	0.993533
1403			14	85	0.993533
1404	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain