SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16317

Length: 502 nt

UniGene Fasta

>sp_v3.0_unigene16317
ATCCCATCTGAAGCAGCGTGGACAATTCCAGACTGTGTGCCATCTCCTAACTGGCCCCATAATGGGAATATTGAGTTGAGAGAGTTACAGGTTCGTTACCGTCCAAACACTCCTCTTGTTCTGAAGGGCATCAGTCTGAATATTAAAGCTGGGGAGAAGATTGGTGTAGTAGGTCGTACTGGAAGTGGGAAATCAACCCTGATTCAAGCGTTGTTTCGGCTTGTTGAGCCTGCTGGAGGCAAAATAATCATCGATGAAGTTGATATAACCAACTTGGGCCTTCATGATCTGCGATCTCGTTTTGGCATCATACCACAAGAACCTGTTCTTTTCGAGGGAACTGTTAGAAATAACATCGATCCTCTTGGGCATTACACTGATGATGAAATTTGGAAGAGCCTTGAAAGATGCCAGCTCAGCAATGTTGTTGCGTCAAAAAATGAAAAATTGGACTCTCTGGTGGTCGACAGTGGAGACAATTGGAGTGTTGGGCAAAGGCAGC

Ace file of the UniGene sp_v3.0_unigene16317

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter-like protein [Arabidopsis thaliana]	-	-	77%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	34%
Sma3	Multidrug resistance protein ABC transporter family	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	4.624e-09	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	3.176e-37	-

Source	Gene names
Sma3	At1g04120; At1g30400; At1g30410; At1g30420; At2g34660; At2g47800; At3g13080; At3g13090; At3g13100; At3g21250; At3g59140; At3g60160; At3g60970; At3g62700; B1065G12.13; B1157F09.14; CHLREDRAFT_134058; CHLREDRAFT_141872; CHLREDRAFT_143900; CHLREDRAFT_190380;

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sulfonylurea receptor activity	GO:0008281	Molecular Function	-
Sma3	folic acid transporter activity	GO:0008517	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	chlorophyll catabolite transmembrane transporter activity	GO:0010290	Molecular Function	-
Sma3	glutathione S-conjugate-exporting ATPase activity	GO:0015431	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G62700.1	ATMRP10, MRP10, ABCC14 multidrug resistance-associated protein 10 chr3:23190428-23195727 REVERSE LENGTH=1539	77%
RefSeq	Arabidopsis thaliana	NP_191829.1	ABC transporter C family member 14 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002321011.1	multidrug resistance protein ABC transporter family [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 167 - 1316

Fln protein: IPSEAAWTIPDCVPSPNWPHNGNIELRELQVRYRPNTPLVLKGISLNIKAGEKIGVVGRTGSGKSTLIQALFRLVEPAGGKIIIDEVDITNLGLHDLRSRFGIIPQEPVLFEGTVRNNIDPLGHYTDDEIWKSLERCQLSNVVASKNEKLDSLVVDSGDNWSVGQRQ

Protein Length: 168

Fln nts: ATCCCATCTGAAGCAGCGTGGACAATTCCAGACTGTGTGCCATCTCCTAACTGGCCCCATAATGGGAATATTGAGTTGAGAGAGTTACAGGTTCGTTACCGTCCAAACACTCCTCTTGTTCTGAAGGGCATCAGTCTGAATATTAAAGCTGGGGAGAAGATTGGTGTAGTAGGTCGTACTGGAAGTGGGAAATCAACCCTGATTCAAGCGTTGTTTCGGCTTGTTGAGCCTGCTGGAGGCAAAATAATCATCGATGAAGTTGATATAACCAACTTGGGCCTTCATGATCTGCGATCTCGTTTTGGCATCATACCACAAGAACCTGTTCTTTTCGAGGGAACTGTTAGAAATAACATCGATCCTCTTGGGCATTACACTGATGATGAAATTTGGAAGAGCCTTGAAAGATGCCAGCTCAGCAATGTTGTTGCGTCAAAAAATGAAAAATTGGACTCTCTGGTGGTCGACAGTGGAGACAATTGGAGTGTTGGGCAAAGGCAGC

Fln Alignment:

Contig16317___GNIELRELQVRY--RPNTPLVLKGISLNIKAGEKIGVVGRTGSGKSTLIQALFRLVEPAGGKIIIDEVDITNLGLHDLRSRFGIIPQEPVLFEGTVRNNI--DPLGHYTDDEIWKSLERCQLSNVVASKNEKLDSLVVDSGDNWSVGQRQ
E6Y0T0_______________GDIEFQHVSFKYPTRPDVQ-IFRDLCLFVHSGKTVALVGESGSGKSTAIALLERFYDPDSGRIFLDGVEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGAVTDEQIIAAAEAANAHKFISSLPQGYNINVGERGVQLSGGQKQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain