SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16284

Length: 380 nt

UniGene Fasta

>sp_v3.0_unigene16284
GGTGTTTCGCGTTGCAGATCTTGGGTGTGCAACGGGAATTAACACACTTATTGTCGCCGACACCATCGTCCAAGCCGTACAAGCAACGTGCAGTGCTCATTGTGTGGAGGTGCCGGAATTTGAAGTTAACTTTGTTGATCTTCCTTCCAATGATTTTAACACGCTCCTTCGCTCGCTGCCTCCACATCAACAATTAACAGACCGCGCTCACAAGAAGGACGAAGGCGAGCATAGTTTCAGTGAGCCTCCGGCGTCAAGATCTTACTTTGCGGCAGTGGTCGCCGGGTCGTTTTACAAAAGACTTTTTCCAGCTCAGAGCCTCCATTTTTGTCACTCTTCCAGCAGCCTTCACTGGCTTTCACAGATTCCTGATAGCCTTG

Ace file of the UniGene sp_v3.0_unigene16284

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase	-	-	9.99995e-41	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase	-	-	4.849e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Jasmonate O-methyltransferase.	EC:2.1.1.141	-	1.939e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592		1.939e-07	%

Source	Gene names
Sma3	At1g19640; F14P1.3; GSVIVT00024863001; GSVIVT00027252001; JMT; NTR1; PHYPADRAFT_151064; SAMT; VITISV_005510; VITISV_041198; jmt;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	jasmonate O-methyltransferase activity	GO:0030795	Molecular Function	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	jasmonic acid metabolic process	GO:0009694	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55250.1	IAMT1 IAA carboxylmethyltransferase 1 chr5:22407589-22410854 REVERSE LENGTH=386	3.0e-19	45%
RefSeq	Arabidopsis thaliana	NP_001078756.1	IAA carboxylmethyltransferase 1 [Arabidopsis thaliana]	2.0e-19	45%
RefSeq	Populus trichocarpa	XP_002298843.1	S-adenosyl-L-methionine:carboxyl methyltransferase family protein [Populus trichocarpa]	7.0e-19	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0Y6

Fln msg: Distance to subject end: 204 aas, your sequence is shorter than subject: 126 - 389

Fln protein: VFRVADLGCATGINTLIVADTIVQAVQATCSAHCVEVPEFEVNFVDLPSNDFNTLLRSLPPHQQLTDRAHKKDEGEHSFSEPPASRSYFAAVVAGSFYKRLFPAQSLHFCHSSSSLHWLSQIPDSL

Protein Length: 127

Fln nts: GGTGTTTCGCGTTGCAGATCTTGGGTGTGCAACGGGAATTAACACACTTATTGTCGCCGACACCATCGTCCAAGCCGTACAAGCAACGTGCAGTGCTCATTGTGTGGAGGTGCCGGAATTTGAAGTTAACTTTGTTGATCTTCCTTCCAATGATTTTAACACGCTCCTTCGCTCGCTGCCTCCACATCAACAATTAACAGACCGCGCTCACAAGAAGGACGAAGGCGAGCATAGTTTCAGTGAGCCTCCGGCGTCAAGATCTTACTTTGCGGCAGTGGTCGCCGGGTCGTTTTACAAAAGACTTTTTCCAGCTCAGAGCCTCCATTTTTGTCACTCTTCCAGCAGCCTTCACTGGCTTTCACAGATTCCTGATAGCCTTG

Fln Alignment:

Contig16284___VFRVADLGCATGINTLIVADTIVQAVQATCSAHCVEVPEFEVNFVDLPSNDFNTLLRSLPPHQQLTDRAHKKDEGEHSFSEPPASRSYFAAVVAGSFYKRLFPAQXXXXXXXXXXXXXXXQIPD
A9P0Y6_______________VFRIADFGCATGINTLLVADTIVQAVQTTCSSRSIEVPKFQVYFADLPSNDFNLLLRSLPPHQQLADRAHKKDEDDRGFTEPPATRSYFAAVVSGSFYKRLFPPKTLHFCHSASSLHWLSKVPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain