SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16247

Length: 423 nt

UniGene Fasta

>sp_v3.0_unigene16247
CAAATGCAGCGTATTTCTATTCAGTCTACACAGTGTTGAGGGCTGCAACTGATAATACTTTCAGGGGTATTGATTTTTTTGAGACTAGTGCCATGCTTATCTCCTTTATTCTTCTTGGAAAGTATTTGGAAGTTCTGGCCAAAGGGAAAACTTCAGAAGCTATTGCCAAGCTGATGGATTTGACACCAGATACGGCCACTTTATTGACTCTTGATACCCATGGAAATGTTGTATCTGAACGTACAATTAGCAGTCAGCTGATCCAACGCAATGATACAATAAAAATTTTACCAGGTGAGAAGGTCTCTTCAGATGGTTTGGTTGTTTGGGGACAAAGTCATGTCAATGAAAGTATGGTAACAGGTGAAGCCAGGCCTGTTGCAAAGCGAATTGGTGATGAAGTCATTGGTGGCACGGCTTCGC

Ace file of the UniGene sp_v3.0_unigene16247

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copper-transporting atpase p-type, putative n=1 Tax=Ricinus communis RepID=B9RC99_RICCO	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Heavy metal ATPase	-	-	6.454e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Copper-exporting ATPase.	EC:3.6.3.4	-	3.009e-17	-

Source	Gene names
Sma3	At1g63440; At5g44790; CHLREDRAFT_206047; CTP1; F2K11.18; GSVIVT00000399001; GSVIVT00000403001; GSVIVT00000405001; GSVIVT00021180001; GSVIVT00024633001; GSVIVT00030125001; HMA4; HMA5; K23L20.14; MICPUCDRAFT_58940; MICPUN_58693; OJ1225_F07.30; OJ1524_D08.15

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	copper-exporting ATPase activity	GO:0004008	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	copper ion transport	GO:0006825	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	detoxification of copper ion	GO:0010273	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Flagellar motor protein MotA, conserved site	IPR000540	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3		IPR001756	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3		IPR001877	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	Heavy metal-associated domain, copper ion-binding	IPR006122	-	-
Sma3	ATPase, P type, cation/copper-transporter	IPR006403	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Tachykinin/Neurokinin-like, conserved site	IPR013055	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G63440.1	HMA5 heavy metal atpase 5 chr1:23527655-23531109 FORWARD LENGTH=995	76%
RefSeq	Arabidopsis thaliana	NP_176533.1	Cu2+-exporting ATPase [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002303580.1	heavy metal ATPase [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: Distance to subject end: 484 aas, your sequence is shorter than subject: 140 - 998

Fln protein: NAAYFYSVYTVLRAATDNTFRGIDFFETSAMLISFILLGKYLEVLAKGKTSEAIAKLMDLTPDTATLLTLDTHGNVVSERTISSQLIQRNDTIKILPGEKVSSDGLVVWGQSHVNESMVTGEARPVAKRIGDEVIGGTAS

Protein Length: 141

Fln nts: CAAATGCAGCGTATTTCTATTCAGTCTACACAGTGTTGAGGGCTGCAACTGATAATACTTTCAGGGGTATTGATTTTTTTGAGACTAGTGCCATGCTTATCTCCTTTATTCTTCTTGGAAAGTATTTGGAAGTTCTGGCCAAAGGGAAAACTTCAGAAGCTATTGCCAAGCTGATGGATTTGACACCAGATACGGCCACTTTATTGACTCTTGATACCCATGGAAATGTTGTATCTGAACGTACAATTAGCAGTCAGCTGATCCAACGCAATGATACAATAAAAATTTTACCAGGTGAGAAGGTCTCTTCAGATGGTTTGGTTGTTTGGGGACAAAGTCATGTCAATGAAAGTATGGTAACAGGTGAAGCCAGGCCTGTTGCAAAGCGAATTGGTGATGAAGTCATTGGTGGCACGGCTTCGC

Fln Alignment:

Contig16247___NAAYFYSVYTVLRAATDNTFRGIDFFETSAMLISFILLGKYLEVLAKGKTSEAIAKXXXXXXXXXXXXXXXXHGNVVSERTISSQLIQRNDTIKILPGEKVSSDGLVVWGQSHVNESMVTGEARPVAKRIGDEVIGGT
B8LQ20_______________SAAYFYSVCALIYGAVFH-YRLATYFETSAMLITFVLLGKYLEVVAKGKTSNAIKKLLELAPTTALLLITDSDGKHVEEKEIDAQLIQRSDMLKVYPGSKVPADGTVVWGSSHVNESMITGESALVSKEVGGTVIGGT

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
13	75		25		0.996473
14	25			75	0.996473
15		25		75	0.996473
19	75			25	0.996473
20			25	75	0.996473
21			25	75	0.996473
23	75			25	0.996473
30	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain