SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16155

Length: 558 nt

UniGene Fasta

>sp_v3.0_unigene16155
CGTCGTGACCTTGGCTGTCACTCATCTCGTGAAGTTCCAACTGATAACCTAGCTATTTGCTTTGTATCTGAAGCCTTTCAATCCCTTACCCACTTGAATCCCAATGGCGTTGGCATGGCAACAATTTCCTTATTTGCCTACAACCAGGCTGAAATCGAAAATTATAGGAGGCGTTTTTCTCTTCATTACCAACGTGCATATACAATTGGCTTTTCATCTGCCTCGGCCTCCATTTCCACTGCTGCATCTTTCCATGGCACCAATCATTGTTACAGTCGCGGCCCAGATGTCAAGAACACCTTCGCAATCCATCTCTACCATCGTCTTATTCCTTACTGATTGCGAGTTTTCACTGACCACCAGGAATAGGAGGACGCGCAGAACTTAGCTTCTCAAATAGAAGGAGCTATTGCGGTTGTCTCGGTTCATGTTGCCATTTTCTTTCTGACCTATGCAGAATCAAAATGGTGTCTGAATGAGCTCCTCCTCATGTCCCAGTAGTGGGCTACCATTATTCCAGTGTTTTATGATGTCAAACCCTAATGAAAAAATGAAATA

Ace file of the UniGene sp_v3.0_unigene16155

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	6.0e-21	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ96

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 48 aas, your sequence is shorter than subject: 129 - 166

Fln protein: MATISLFAYNQAEIENYRRRFSLHYQRAYTIGFSSASASISTAASFHGTNHCYSRGPDVKNTFAIHLYHRLIPY*LRVFTDHQE*EDAQNLASQIEGAIAVVSVHVAIFFLTYAESKWCLNELLLMSQ*

Protein Length: 130

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCGTGAAGTTCCAACTGATAACCTAGCTATTTGCTTTGTATCTGAAGCCTTTCAATCCCTTACCCACTTGAATCCCAATGGCGTTGGC_-_ATGGCAACAATTTCCTTATTTGCCTACAACCAGGCTGAAATCGAAAATTATAGGAGGCGTTTTTCTCTTCATTACCAACGTGCATATACAATTGGCTTTTCATCTGCCTCGGCCTCCATTTCCACTGCTGCATCTTTCCATGGCACCAATCATTGTTACAGTCGCGGCCCAGATGTCAAGAACACCTTCGCAATCCATCTCTACCATCGTCTTATTCCTTACTGATTGCGAGTTTTCACTGACCACCAGGAATAGGAGGACGCGCAGAACTTAGCTTCTCAAATAGAAGGAGCTATTGCGGTTGTCTCGGTTCATGTTGCCATTTTCTTTCTGACCTATGCAGAATCAAAATGGTGTCTGAATGAGCTCCTCCTCATGTCCCAGTAGTGGGCTACCATTATTCCAGTGTTTTATGATGTCAAACCCTAATGAAAAAATGAAATA

Fln Alignment:

Contig16155___RGPDVKNTFAIHLYHRLIPY*LRVFTDHQE*EDAQNLASQIEGAIAVVSVHVAIFFLTYAESKWCLNELLLMSQ*WATIIPVFYDVKP
B8LQ96_______________RGPDVKKTFASHLYRDLSKYGLKVFLDDPEMQPGDSLIRQIEGAVGTASVHVAVFSSRYAESRWCLVELLLMLKSGKTIIPVFYDVKP

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
353	14	85			0.993533
354			14	85	0.993533
375		83	16		0.994512
376	16		83		0.994512
377		83	16		0.994512
419		50		50	1.0
522		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain