SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16140

Length: 2642 nt

UniGene Fasta

>sp_v3.0_unigene16140
CGTCGTGACCTTGGCTGTCACTCATATTTTCTGTTGTTGCACATGTCTTGTTGCTTTTGAGTTTGATCCTCGTTTGTAGCTGTATTTTTCATTTCATCTGGTCTGCCCTCGAAGACAGGGCCAGTCTATGACATTGCGTATATATGTCTGATCCTGCCCATTCACATTAATTTCCTTTAATGGACTGCATTCCACCCATGATTTCTGTTTCCTATTTATAAGCTCTTGTCGTTCACTGGGTTTCTATTATTTCAAGTGTCCACGGCACGCTGCATCAGAACATAAGTTAGGAAGATTTTCTGAACTGCTCTCCGGCTTCAAATTTGAGATACAAGATGAGGTCGAAAACAAATTCAGCGGACAGCAGGACCAGGAGTTCTGTTTCTATCTTCATTGTTTTGGGATTATGCTGTTTTTTCTACATACTGGGTGCTTGGCAGAAGAGTGGCTTTGGAAAGGGTGACAGGATTGCAGAGGAAATCACCAAACTGACAGACTGTACAACTTTGTCTCTAAATTTCGAGACTCACCACAATGAAGGAGATAACATTGAACTTTCTGAATCCAAAGCAAAGATATTCAAACCTTGTAGTGCCAAATACATTGATTACACGCCTTGTCATGACCAAAAGCGAGCTATGACATTTCCTAGAGATAATATGATATACAGAGAGAGGCATTGCCCACCAGAGGATGAGAAGCTACATTGCCTCATTCCTGCTCCAAGAGGATACAAAAATCCATTTCCATGGCCAAAGAGCCGTGACTATGTGCCATATGCTAATGTTCCCTATAAAAGTCTTACAGTAGAGAAGGCTATTCAGAATTGGGTTCAATTCGAAGGTGATGTGTTCAAGTTTCCTGGAGGAGGAACAATGTTTCCTCAAGGGGCAGATAAGTATATTGATGATCTGGCTCAAGTGATACCTATTTCTGATGGTACTGTCAGGACTGCATTGGACACAGGCTGTGGGGTGGCAAGCTGGGGTGCATATCTCTTGAAGAGAAATGTTTTGACCATGTCATTTGCTCCAAGGGATTCACATGAAGCTCAAGTGCAGTTTGCTTTGGAGCGGGGTGTCCCTGCGGTGATTGGAGTAATGGGGACACAGCGGCTTCCATACCCTTCTAGGGCTTTTGATATGTCTCATTGTTCACGATGTTTGATTCCCTGGACTGCAAATGATGGTTTGTATTTAATAGAAGTGGATCGAGTCCTAAGACCAGGTGGATATTGGATTCTCTCTGGTCCTCCCATCAATTGGAAGCAGTATTACCAAGCTTGGCAGAGGTCTAAAGAGGAGCTCCAGAAGGAACAAGAAAGAATTGAAGAAATAGCAGAACTTTTGTGCTGGGAAAAGAAGTATGAAAAAGGTGACCTTGCCATTTGGCAAAAGAGAATTAATACTCATTCTTGTCCTAGAAGTCGGGATACTATTGACCCACCTCCTGCATGTGAATCAGTCAATCCAGATGATTCTTGGTATAAGAGAATGGAAAGATGCACTACACGAATGCCTACAGCAAGTGATGCTAGTGAAGTGGCTGGAGGGATTTTGGAAAAGTTCCCAAAGCGCCTTAATGCTGTTCCTCCTAGAGTTCTCAGTGGTTCATTATCAGGTGTTTCAGCTGAGTCATATAATGCTGATACACAGTTGTGGAAGAAGCATGTGGAGGCCTACAAAAGAATCAACAAATATATTGGGGAGATTAGATATCGCAATGTTATGGACATGAATGCAGGTCTTGGTGGCTTTGCAGCAGCACTTACATCGAACAAAGCTTGGGTTATGAATGTTGTCCCAACCATTGCGAAAGACAATACACTTGGTGTGATATATGAGAGAGGCCTTATTGGAATTTATCATGACTGGTGTGAAGCTTTCTCAACATATCCAAGGACATATGATCTAATTCATGCAAATGGAGTTTTCAACATGTACCAAGACAGGTGCAACACAGAAGACATTCTTTTAGAGATGGATCGTATTTTGCGGCCAGAGGGCGCAGTCATACTTCGAGACAATGTTGATGTTTTGAACAGGGTGAAAAAAGTATTAGGTGGTATTAGATGGCATAGTAAGCTGCTGGACCACGAAGATGGACCTCTTGTTCCTGAAAAAATATTGATAGCTGTGAAAAAGTATTGGGTAGCTGATGGGAACCGGACTGCAGACTCTTGAGCAAAAGTAACGAGAAAGTATGATAGCAACGTTGTAGGATATTGCAGCAAGGTCCCCATTGACGCGTCGTGAAGGAAGTTACTTTAGGTTCTCACAAAAGAATTTACAAAAAAATTGGCAATGGATCCCGCCTTTGAATTTTTGTTGCGATTTTAGGCTTTAATGTAAGAGGATTGATTCTTGTGAAAATCTGCCAGGCTTGATTACTTAAGTGCTGCATGCGTTCTTCATCTAATTTATTTTTTTGTTAGTATTGGCCCCACTTTTTGGATTTGGGGTTAGATTGTTAATACATATTTGCAACAGTAATGTTTACGAGCATGTAAAATTGTAGAAGTTTCCTAGATGCGTAGAACTGTCATTTTGACTTGACCCCGCTTATTGTGCTTGCTGTTTCTACATCTCTGTCTACATGAGTTGGAAAGTCCTTTTAAATAAAAGAAATGTAACTGCAAAAAA

Ace file of the UniGene sp_v3.0_unigene16140

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative methyltransferase PMT2 [Arabidopsis thaliana] ref\|NP_849710.1\| putative methyltransferase PMT2 [Arabidopsis thaliana] sp\|B9DFI7.2\|PMT2_ARATH RecName: Full=Probable methyltransferase PMT2 gb\|AAK59830.1\| At1g26850/T2P11_4 [Arabidopsis thaliana] gb\|	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	ATP binding protein, putative	-	-	6.225e-24	-

Source	Gene names
Sma3	AT1G26850; AT1G31850; AT4G18030; AT4G19120; AT4g00740; AT4g00750; AT4g10440; AT4g14360; AT4g18030; AT4g19120; At1g04430; At1g04430/F19P19.11; At1g26850; At1g29470; At1g31850; At1g33170; At1g77260; At2g34300; At2g39750; At2g40280; At2g43143; At2g43200; At2

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3		IPR017909	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G26850.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr1:9301146-9303432 REVERSE LENGTH=616	71%
RefSeq	Arabidopsis thaliana	NP_564265.1	putative methyltransferase PMT2 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002329585.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMQ4

Fln msg:

Fln protein: MRSKTNSADSRTRSSVSIFIVLGLCCFFYILGAWQKSGFGKGDRIAEEITKLTDCTTLSLNFETHHNEGDNIELSESKAKIFKPCSAKYIDYTPCHDQKRAMTFPRDNMIYRERHCPPEDEKLHCLIPAPRGYKNPFPWPKSRDYVPYANVPYKSLTVEKAIQNWVQFEGDVFKFPGGGTMFPQGADKYIDDLAQVIPISDGTVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDSHEAQVQFALERGVPAVIGVMGTQRLPYPSRAFDMSHCSRCLIPWTANDGLYLIEVDRVLRPGGYWILSGPPINWKQYYQAWQRSKEELQKEQERIEEIAELLCWEKKYEKGDLAIWQKRINTHSCPRSRDTIDPPPACESVNPDDSWYKRMERCTTRMPTASDASEVAGGILEKFPKRLNAVPPRVLSGSLSGVSAESYNADTQLWKKHVEAYKRINKYIGEIRYRNVMDMNAGLGGFAAALTSNKAWVMNVVPTIAKDNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHANGVFNMYQDRCNTEDILLEMDRILRPEGAVILRDNVDVLNRVKKVLGGIRWHSKLLDHEDGPLVPEKILIAVKKYWVADGNRTADS*

Protein Length: 617

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTTTCTGTTGTTGCACATGTCTTGTTGCTTTTGAGTTTGATCCTCGTTTGTAGCTGTATTTTTCATTTCATCTGGTCTGCCCTCGAAGACAGGGCCAGTCTATGACATTGCGTATATATGTCTGATCCTGCCCATTCACATTAATTTCCTTTAATGGACTGCATTCCACCCATGATTTCTGTTTCCTATTTATAAGCTCTTGTCGTTCACTGGGTTTCTATTATTTCAAGTGTCCACGGCACGCTGCATCAGAACATAAGTTAGGAAGATTTTCTGAACTGCTCTCCGGCTTCAAATTTGAGATACAAG_-_ATGAGGTCGAAAACAAATTCAGCGGACAGCAGGACCAGGAGTTCTGTTTCTATCTTCATTGTTTTGGGATTATGCTGTTTTTTCTACATACTGGGTGCTTGGCAGAAGAGTGGCTTTGGAAAGGGTGACAGGATTGCAGAGGAAATCACCAAACTGACAGACTGTACAACTTTGTCTCTAAATTTCGAGACTCACCACAATGAAGGAGATAACATTGAACTTTCTGAATCCAAAGCAAAGATATTCAAACCTTGTAGTGCCAAATACATTGATTACACGCCTTGTCATGACCAAAAGCGAGCTATGACATTTCCTAGAGATAATATGATATACAGAGAGAGGCATTGCCCACCAGAGGATGAGAAGCTACATTGCCTCATTCCTGCTCCAAGAGGATACAAAAATCCATTTCCATGGCCAAAGAGCCGTGACTATGTGCCATATGCTAATGTTCCCTATAAAAGTCTTACAGTAGAGAAGGCTATTCAGAATTGGGTTCAATTCGAAGGTGATGTGTTCAAGTTTCCTGGAGGAGGAACAATGTTTCCTCAAGGGGCAGATAAGTATATTGATGATCTGGCTCAAGTGATACCTATTTCTGATGGTACTGTCAGGACTGCATTGGACACAGGCTGTGGGGTGGCAAGCTGGGGTGCATATCTCTTGAAGAGAAATGTTTTGACCATGTCATTTGCTCCAAGGGATTCACATGAAGCTCAAGTGCAGTTTGCTTTGGAGCGGGGTGTCCCTGCGGTGATTGGAGTAATGGGGACACAGCGGCTTCCATACCCTTCTAGGGCTTTTGATATGTCTCATTGTTCACGATGTTTGATTCCCTGGACTGCAAATGATGGTTTGTATTTAATAGAAGTGGATCGAGTCCTAAGACCAGGTGGATATTGGATTCTCTCTGGTCCTCCCATCAATTGGAAGCAGTATTACCAAGCTTGGCAGAGGTCTAAAGAGGAGCTCCAGAAGGAACAAGAAAGAATTGAAGAAATAGCAGAACTTTTGTGCTGGGAAAAGAAGTATGAAAAAGGTGACCTTGCCATTTGGCAAAAGAGAATTAATACTCATTCTTGTCCTAGAAGTCGGGATACTATTGACCCACCTCCTGCATGTGAATCAGTCAATCCAGATGATTCTTGGTATAAGAGAATGGAAAGATGCACTACACGAATGCCTACAGCAAGTGATGCTAGTGAAGTGGCTGGAGGGATTTTGGAAAAGTTCCCAAAGCGCCTTAATGCTGTTCCTCCTAGAGTTCTCAGTGGTTCATTATCAGGTGTTTCAGCTGAGTCATATAATGCTGATACACAGTTGTGGAAGAAGCATGTGGAGGCCTACAAAAGAATCAACAAATATATTGGGGAGATTAGATATCGCAATGTTATGGACATGAATGCAGGTCTTGGTGGCTTTGCAGCAGCACTTACATCGAACAAAGCTTGGGTTATGAATGTTGTCCCAACCATTGCGAAAGACAATACACTTGGTGTGATATATGAGAGAGGCCTTATTGGAATTTATCATGACTGGTGTGAAGCTTTCTCAACATATCCAAGGACATATGATCTAATTCATGCAAATGGAGTTTTCAACATGTACCAAGACAGGTGCAACACAGAAGACATTCTTTTAGAGATGGATCGTATTTTGCGGCCAGAGGGCGCAGTCATACTTCGAGACAATGTTGATGTTTTGAACAGGGTGAAAAAAGTATTAGGTGGTATTAGATGGCATAGTAAGCTGCTGGACCACGAAGATGGACCTCTTGTTCCTGAAAAAATATTGATAGCTGTGAAAAAGTATTGGGTAGCTGATGGGAACCGGACTGCAGACTCTTGA___GCAAAAGTAACGAGAAAGTATGATAGCAACGTTGTAGGATATTGCAGCAAGGTCCCCATTGACGCGTCGTGAAGGAAGTTACTTTAGGTTCTCACAAAAGAATTTACAAAAAAATTGGCAATGGATCCCGCCTTTGAATTTTTGTTGCGATTTTAGGCTTTAATGTAAGAGGATTGATTCTTGTGAAAATCTGCCAGGCTTGATTACTTAAGTGCTGCATGCGTTCTTCATCTAATTTATTTTTTTGTTAGTATTGGCCCCACTTTTTGGATTTGGGGTTAGATTGTTAATACATATTTGCAACAGTAATGTTTACGAGCATGTAAAATTGTAGAAGTTTCCTAGATGCGTAGAACTGTCATTTTGACTTGACCCCGCTTATTGTGCTTGCTGTTTCTACATCTCTGTCTACATGAGTTGGAAAGTCCTTTTAAATAAAAGAAATGTAACTGCAAAAAA

Fln Alignment:

Contig16140___YKMRSKTNSADSRTRSSVSIFIVLGLCCFFYILGAWQK--------SGFGKGDRIAEEITKLTDCTTLSLNFETHHNEGDNIELSESKAKI-FKPCSAKYIDYTPCHDQKRAMTFPRDNMIYRERHCPPEDEKLHCLIPAPRGYKNPFPWPKSRDYVPYANVPYKSLTVEKAIQNWVQFEGDVFKFPGGGTMFPQGADKYIDDLAQVIPISDGTVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDSHEAQVQFALERGVPAVIGVMGTQRLPYPSRAFDMSHCSRCLIPWTANDGLYLIEVDRVLRPGGYWILSGPPINWKQYYQAWQRSXXXXXXXXXXXXXXAELLCWEKKYEKGDLAIWQKRINTHSCPRSRDTIDPPPACESVNPDDSWYKRMERCTTRMPTASDASEVAGGILEKFPKRLNAVPPRVLSGSLSGVSAESYNADTQLWKKHVEAYKRINKYIGEIRYRNVMDMNAGLGGFAAALTSNKAWVMNVVPTIAKDNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHANGVFNMYQDRCNTEDILLEMDRILRPEGAVILRDNVDVLNRVKKVLGGIRWHSKLLDHEDGPLVPEKILIAVKKYW
B8LMQ4_______________YSGSPKLHQSEFKKKRLTWILGVAGLCTLFYFLGAWQNTLPPPSEASRLRKANVSCSSLSPIVSSSSVSLDFEAHHAVGGN---ETSKDSINFESCDIKYSEYTPCQDPDRARKFDRTKLIYRERHCPDKKEALKCLIPAPPGYKNPFRWPKSRDYAWFANVPHRELTIEKAVQNWIQVEDDKFRFPGGGTMFTRGADAYIDDIDKLIPLTDGSIRTAIDTGCGVASWGAYLLKRNILTMSFAPRDTHEAQVQFALERGVPAMIGIMASQRIPYPARAFDMAHCSRCLIPWKDYDGVYLIEVDRVLRPGGYWILSGPPVNWKKYHRGWERTPEDLKQEQDAIEDVAKRLCWKKVVEKGDLAIWQKPMNHIDCVKSRNIYKVPHICKNDNPDAAWYRKMETCITPLPEVNDINAVAGGALEKWPKRVTAVPPRIRSGSIPGITAENFNEDSKLWTDRVANYKRLIGQLGQGRYRNIMDMNAGLGGFAAALANDPVWVMNVVPSDAKHNTLGVIYERGFIGTYQDWCEAFSTYPRTYDLIHASGLLSMYQDRCEISDILLEMDRILRPEGTVIFRDTVDVLVKVENLIGGMRWQSQMMDHESGPFNQEKILIAVKQYW

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
59	10	90			0.90298
61			10	90	0.90298
62			10	90	0.90298
63			10	90	0.90298
197	33	66			1.0
249		75	25		1.0
298	84	15			1.0
364	27		72		1.0
397		10		90	0.90298
631		75		25	0.996473
670	66		33		0.997452
2626	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain