SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16121

Length: 1954 nt

UniGene Fasta

>sp_v3.0_unigene16121
CGTCGTGACCTTGGCTACAATGGGGCCTTTCCCTTTTGGTTTTGAAATTGCGTCCGACTGATTCACCCATTTGTTGATTTTCCGACCAAGCGGAGCTTGCCGAGGACATTGATTTTGCAGCTTATTCTCCCGGGATTCTGGGCTCTGGCAGAAATTTGCAGAAATGGTTAAGGAGACTGGTTACTATGACGTGCTAGGAGTCAGTCCCACGGCCACTGAGGCAGAGATCAAGAAAGCTTATTACATGAAGGCCAGGCAAGTTCACCCTGATAAAAACCCAAATGATCCTCAAGCGGCAGAAAATTTTCAGGTATTGGGAGAAGCTTACCAAGTTCTAAGTGATCCAGCACAGCGGGCAGCATATGATGCACATGGAAAAGCAGGCGTATCCACGGAAACAATGATAGATCCAGCAGCAGTTTTTGCTATGCTGTTTGGAAGCGAGTTGTTTGAAGACTATATAGGCCAGCTTGCAATGGCTTCAATGGCTTCTTTGGAGATGTTTACTGAAGGTGAACAGATAGATACCAGGAAACTACAAGAGAAGATGAAGGCTGTCCAAAAGGAAAGAGAAGAAAAACTTGCACAGATTTTGAAAGATCGTCTGAATCAGTATGTGCAAGGTGACAAGGATGGGTTTATACAACAAGCCAAATCTGAGGTTCAACGGCTCAACAATGCAGCTTATGGAGGCGATATGCTGCAGACAATTGGTTACATATATGCAAGGCAAGCGGCAAAGGAACTTGGAAAGAAAGCCATATATTTGGGTGTACCATTTATAGCTGAATGGTTCAGAAACAAAGGGCATTTTATAAAATCTCAGGTCACTGCAGCAACAGGTGCTTTTGCACTACTACAATTACAAGAAGATATGAAACGGCAACTCAGTACAGAGGGGAATTATTCTGAAGGTGATTTGGAAGCATATCTACAGTCCAACAAAGAGTTGATGATTAACTCACTCTGGAAACTAAATGTGGCTGATATTGAAGGCACCCTCTCACATGTGTGTCAGATGGTCTTGCAAGATAACACTGCAAAGAAAGAAGATCTTCGAGCTCGTGCAAAGGGTTTGAAAACTCTGGGAAAGATTTTCCAAACTGCAAAACTACAAAATGGAGATGGAATTCCAGAAAGAGACACTGCTCCTAGGTTGGAAAGGGAAGAAAACAGCAACTATGCAAGCTCTCCCGATACATCACCCAAGACTCCAACCAGATCGACTCCACTTTCCTCTCAGAGTCCTTACGTGGAGTCCCCACAATACACTGGTGTTCAAGATCAATTTATAAACTTTCCTATGCCAGCACCACCTCGAGGGGCATATCGGCAATCATCTTCAGTTACCAAGGAGTAGTTTCGGCAAGATGGTATGATTTCTTTGGTTCAATTGTATCCTGTGATATACTATTGAGTTGACTATGTAAATGGGAAACACTCTTTACAGTTTATAATGTTACTCATTGTTGCTGGATTTCAATCATATGAGATTTTGTATTCATTATTTAGGGGTTTTTTCATGGGTCAGAGGTGATTATTGAGCATTATGTATGTTTAAAATGGATGTAGATTCAAGGTGAATCGTGGAAGTTGCCATGTTATATACCATACCTCTTCCTTTTTGTTTATTTAGCAGCTTGTATTCGACAAGCTGATCCAACACTACGCAAATCACTCGTTTAGGGTTTAGTGTGTATTCTAGGTGCCATGTTTGGACATTTTTATAAGTTATTTATGATTTGGGTTCAGTCTCATGCCTTGTTGTTTTAGCTAATTTGATCTATGTAAAGTTGGACCCATGGCAACTGCATGAAGAATTGTATAGTTCAAGGAAATATATATGCTTATATTTTGGTGGGGCATAAATTATCTTGTCCGGAGCTATTCCCATGAAACAGGTCTTTTTTTAAAGCTCTAGGAGAAATTGCAATGAAGTCAAATGGTGCACATT

Ace file of the UniGene sp_v3.0_unigene16121

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chaperone protein dnaJ 10 [Arabidopsis thaliana] sp\|Q8GYX8.2\|DNJ10_ARATH RecName: Full=Chaperone protein dnaJ 10; Short=AtDjC10; Short=AtJ10 gb\|AAF04450.1\|AC010718_19 putative DnaJ protein; 19794-17391 [Arabidopsis thaliana] gb\|AEE35877.1\| chaperone prote	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Chaperone protein dnaJ 10	-	-	5.144e-15	-

Source	Gene names
Sma3	AT4g39150; ATJ10; At1g21080; At1g76700; At2g21510; At4g39150; C10; DnaJ1; F22K20.12; F28O16.7; GSVIVT00002982001; GSVIVT00002983001; GSVIVT00014341001; GSVIVT00014342001; GSVIVT00036336001; J10; MICPUCDRAFT_34846; OJ1008_F08.4; OJ1081_B12.119; OJ1186_G01.

Source	GOs	Term	Type	Identity
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dehydrin	IPR000167	-	-
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Protein of unknown function DUF677	IPR007749	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G76700.1	DNAJ heat shock N-terminal domain-containing protein chr1:28780619-28783022 REVERSE LENGTH=398	69%
RefSeq	Arabidopsis thaliana	NP_177796.1	chaperone protein dnaJ 10 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002307837.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A862

Fln msg: your sequence is longer than subject: 399 - 345

Fln protein: MVKETGYYDVLGVSPTATEAEIKKAYYMKARQVHPDKNPNDPQAAENFQVLGEAYQVLSDPAQRAAYDAHGKAGVSTETMIDPAAVFAMLFGSELFEDYIGQLAMASMASLEMFTEGEQIDTRKLQEKMKAVQKEREEKLAQILKDRLNQYVQGDKDGFIQQAKSEVQRLNNAAYGGDMLQTIGYIYARQAAKELGKKAIYLGVPFIAEWFRNKGHFIKSQVTAATGAFALLQLQEDMKRQLSTEGNYSEGDLEAYLQSNKELMINSLWKLNVADIEGTLSHVCQMVLQDNTAKKEDLRARAKGLKTLGKIFQTAKLQNGDGIPERDTAPRLEREENSNYASSPDTSPKTPTRSTPLSSQSPYVESPQYTGVQDQFINFPMPAPPRGAYRQSSSVTKE*

Protein Length: 400

Fln nts: CGTCGTGACCTTGGCTACAATGGGGCCTTTCCCTTTTGGTTTTGAAATTGCGTCCGACTGATTCACCCATTTGTTGATTTTCCGACCAAGCGGAGCTTGCCGAGGACATTGATTTTGCAGCTTATTCTCCCGGGATTCTGGGCTCTGGCAGAAATTTGCAGAA_-_ATGGTTAAGGAGACTGGTTACTATGACGTGCTAGGAGTCAGTCCCACGGCCACTGAGGCAGAGATCAAGAAAGCTTATTACATGAAGGCCAGGCAAGTTCACCCTGATAAAAACCCAAATGATCCTCAAGCGGCAGAAAATTTTCAGGTATTGGGAGAAGCTTACCAAGTTCTAAGTGATCCAGCACAGCGGGCAGCATATGATGCACATGGAAAAGCAGGCGTATCCACGGAAACAATGATAGATCCAGCAGCAGTTTTTGCTATGCTGTTTGGAAGCGAGTTGTTTGAAGACTATATAGGCCAGCTTGCAATGGCTTCAATGGCTTCTTTGGAGATGTTTACTGAAGGTGAACAGATAGATACCAGGAAACTACAAGAGAAGATGAAGGCTGTCCAAAAGGAAAGAGAAGAAAAACTTGCACAGATTTTGAAAGATCGTCTGAATCAGTATGTGCAAGGTGACAAGGATGGGTTTATACAACAAGCCAAATCTGAGGTTCAACGGCTCAACAATGCAGCTTATGGAGGCGATATGCTGCAGACAATTGGTTACATATATGCAAGGCAAGCGGCAAAGGAACTTGGAAAGAAAGCCATATATTTGGGTGTACCATTTATAGCTGAATGGTTCAGAAACAAAGGGCATTTTATAAAATCTCAGGTCACTGCAGCAACAGGTGCTTTTGCACTACTACAATTACAAGAAGATATGAAACGGCAACTCAGTACAGAGGGGAATTATTCTGAAGGTGATTTGGAAGCATATCTACAGTCCAACAAAGAGTTGATGATTAACTCACTCTGGAAACTAAATGTGGCTGATATTGAAGGCACCCTCTCACATGTGTGTCAGATGGTCTTGCAAGATAACACTGCAAAGAAAGAAGATCTTCGAGCTCGTGCAAAGGGTTTGAAAACTCTGGGAAAGATTTTCCAAACTGCAAAACTACAAAATGGAGATGGAATTCCAGAAAGAGACACTGCTCCTAGGTTGGAAAGGGAAGAAAACAGCAACTATGCAAGCTCTCCCGATACATCACCCAAGACTCCAACCAGATCGACTCCACTTTCCTCTCAGAGTCCTTACGTGGAGTCCCCACAATACACTGGTGTTCAAGATCAATTTATAAACTTTCCTATGCCAGCACCACCTCGAGGGGCATATCGGCAATCATCTTCAGTTACCAAGGAGTAG___TTTCGGCAAGATGGTATGATTTCTTTGGTTCAATTGTATCCTGTGATATACTATTGAGTTGACTATGTAAATGGGAAACACTCTTTACAGTTTATAATGTTACTCATTGTTGCTGGATTTCAATCATATGAGATTTTGTATTCATTATTTAGGGGTTTTTTCATGGGTCAGAGGTGATTATTGAGCATTATGTATGTTTAAAATGGATGTAGATTCAAGGTGAATCGTGGAAGTTGCCATGTTATATACCATACCTCTTCCTTTTTGTTTATTTAGCAGCTTGTATTCGACAAGCTGATCCAACACTACGCAAATCACTCGTTTAGGGTTTAGTGTGTATTCTAGGTGCCATGTTTGGACATTTTTATAAGTTATTTATGATTTGGGTTCAGTCTCATGCCTTGTTGTTTTAGCTAATTTGATCTATGTAAAGTTGGACCCATGGCAACTGCATGAAGAATTGTATAGTTCAAGGAAATATATATGCTTATATTTTGGTGGGGCATAAATTATCTTGTCCGGAGCTATTCCCATGAAACAGGTCTTTTTTTAAAGCTCTAGGAGAAATTGCAATGAAGTCAAATGGTGCACATT

Fln Alignment:

Contig16121___MVKETGYYDVLGVSPTATEAEIKKAYYMKARQVHPDKNPNDPQAAENFQVLGEAYQVLSDPAQRAAYDAHGKAGVSTETMIDPAAVFAMLFGSELFEDYIGQLAMASMASLEMFTEGEQIDTRKLQEKMKAVQKEREEKLAQILKDRLNQYVQGDKDGFIQQAKSEVQRLNNAAYGGDMLQTIGYIYARQAAKELGKKAIYLGVPFIAEWFRNKGHFIKSQVTAATGAFALLQLQEDMKRQLSTEGNYSEGDLEAYLQSNKELMINSLWKLNVADIEGTLSHVCQMVLQDNTAKKEDLRARAKGLKTLGKIFQTAK-LQNGDGIPERDTAPRLEREENSNYASS
D5A862_______________MAKDTEYYDVLGVSVDASASEIKKAYYIKAKQVHPDKNPNDPHAQHKFQVLGEAYQILSDPKQREDYDKYGKAGVSKESMLDPAAVFGMLFGSDYFEDYVGQLALSSMASVDMAEDGQQPNVQNIMYRMKALQKEREEKLVQTLKGRLQLYVEGQKKEFVDWANAEARRLSNASFGEAMLHTIGYIYTRQAAKQLGKNMFLVGVPFLAEWVRDKGHFMKSQVTAASGAVALMQMQEGLKQKFES-GPTDEEVLSTYLLENKDAMISSLWKINVADIESTLIHVCHAVLRDSTVPKHILNARAKALKKLGTIFQGAKECYRRENSLRKDSGERVDTPQDNTANSS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1860	15		84		0.999986
1864		83	16		0.999991

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain