SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16093

Length: 2054 nt

UniGene Fasta

>sp_v3.0_unigene16093
AGCAGGGTTGCAGATGTTCTTAAAGATCGCCTGGATGGTTCTGTGATACCCGTCGAATGGAAATTTTAGGTGCATTCACAACTAGCAGTGGTGCAACGGTGGAGTTGTTGTACTCTCAGATGTATTCTCCAACCACTCTTACCCAAGCTCGAGACTTTTGCACATTACGATATACGTCGGTACTCGAGGACAGAAACTTGGTGGTTTGTGAACGTTCACTGAACCTGGGTATGGTACCTCCAAATGAAGGTTTTGTCAGAGCAGAGATGCTTTCAAGTGGATATTTAATCCGTCCATGTGGAGGTGTTGGATCAATTGTTTACATTGTTGATCACATGGACCTGGAGGCAGGACGAGCTCCAGAGGTATTAAGGCCTATGTATGAATCTTCTGCTATTCTTGCACAAAAAATGACTATTGCTGCCTTACGTCATTTACGTTCCTTAGCACAAGAGGCTGCTGGTGAGGTTGTGACTGGAGGTACTCTACAACCAGCTGCACTGCGAGCGCTGAGCCTTCGGATTGCCCGGAGCTTCAATGATGCTATAAACAGTTTTCCTGAAGATGGCTGGTTTTCAGTTGCTAGCGACGGGATGGATGATATCAGTATTTCACTTAATTCATCATGGAGTCCTAGAACAGTTGGTCTCAAGTGCAGTTCGTCCAACAACTTGTGGTCTGATGGTGATGGGGGTGTTTTATGTGCCAAGGCTTCGATGCTTTTGCAGAATGTTCCTCCAGCAGTATTGATACGTTTCCTTCGAGAGCATCGGTCGGAGTGGGCAGATTGGGCAGACTGTGAACATGATATGAGCTGTTCAGCCACATTGCGAACTCGTGTATATGGTGCTGCAGCTTTAGCTGGAGCTGAACTTGGCAGACGAGAAGTACCTATGCCTCTAGCCCATTCTGAACATCAAGAGATAATGGAGTTAGTCAAGTTTGAAGGTTATGACTCTGCTCGAGATGGTGCTTTAGTGTCAAAGGAGATGTACTTACTCCAGCTTTGCAATGGCATCGACGAAACTGCTATTGGTGATTGTGCACAGCTAGTTTTTGCCCCTGTTGATGGTGCCCTGTCTGATGATATACCATTGTTGCCATCTGGCTTTCGTGTCATACCGCTAGATACTGGCTTTATGGATGGATATGGTCCGTCTTGCACCCTCGATTTAGCTTCCATGCTGGATGGTGGTTCAGATATGGATGCGGCAAAGACTGAAACTGGAATTTCGGCTAACAATATGCGCTCTATTGTCACCATTGCATTTCAGTTTGGTTATGAGACACATAACTGTGACAGTGTGTCAGTTGCTGCCCACAAGTACATGCGTACTGTTGTTGCTTCTGTTCAGCGTGTTGCAATGGCAATCGCTCCCAGAGTGGGCTCAACACTGGGTTTAAGAAATCTTTCTGGGACCACTGAAGTTCTGACACTTGTCAAACGAATTGTTGGTAGCTACAGGATAAACTTTGGGATGGATCTCTTAAGGAAACAGCCTTCGAATGATGAGGAGCTCTTCAAGATGGTGTGGCACCATTCTGATGCTCTTATATGTTGCACATGCAAGTCATTACCAGAATTCATATTTGCAAATGAAGCAGCTTTAGATATGCTGGAGACTACATCTGGAGGTTTACATGACCTGAGGTGGGATCAGACTCTAGATGAAACAGAAAGGAAAAATGCTTATTCAGATATTACCAAAGTTATGCAGCAGGGATTTGCATACCTCCCAGCTGGAATTCGCCTTTCAAGTATGGGTCGACCTGTTGCTTACGAGAGAGCGATGGCATGGAGTGTAGCCAATGACAGTGAAAGCATGCCATGTGTTGCTTTCATGTTCGTTAATTGGTCATTTTGATTCAGTTTTATAGGAACTGTTACAGACCCTTCTCAGTAATGGCCACTCCATATATATTGCCAGATTGTTAATACTTTTTGCATGAGTAGCTTGGTTTCTGAAATAAAAAACCATCATAAAGGTGGTACGTATAATGAATATAGTTTACTGAACAAATTCCATAGCTAAAAAAGTGGTTGTTCGAGCCAA

Ace file of the UniGene sp_v3.0_unigene16093

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class III homeodomain leucine zipper protein n=2 Tax=Pinaceae RepID=E7DX27_PICGL	-	-	92%
FL-Next	tr=Class III homeodomain leucine zipper protein; Picea glauca (White spruce) (Pinus glauca).	-	-	96%
Sma3	Class III HD-Zip protein HDZ34	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	MEKHLA	IPR013978	-	0.0	-
Sma3	Lipid-binding START	IPR002913	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G52150.2	-	51%
RefSeq	Arabidopsis thaliana	NP_849795.1	homeobox-leucine zipper protein ATHB-15 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002298892.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E7DX27

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 621 - 851

Fln protein: QGCRCS*RSPGWFCDTRRMEILGAFTTSSGATVELLYSQMYSPTTLTQARDFCTLRYTSVLEDRNLVVCERSLNLGMVPPNEGFVRAEMLSSGYLIRPCGGVGSIVYIVDHMDLEAGRAPEVLRPMYESSAILAQKMTIAALRHLRSLAQEAAGEVVTGGTLQPAALRALSLRIARSFNDAINSFPEDGWFSVASDGMDDISISLNSSWSPRTVGLKCSSSNNLWSDGDGGVLCAKASMLLQNVPPAVLIRFLREHRSEWADWADCEHDMSCSATLRTRVYGAAALAGAELGRREVPMPLAHSEHQEIMELVKFEGYDSARDGALVSKEMYLLQLCNGIDETAIGDCAQLVFAPVDGALSDDIPLLPSGFRVIPLDTGFMDGYGPSCTLDLASMLDGGSDMDAAKTETGISANNMRSIVTIAFQFGYETHNCDSVSVAAHKYMRTVVASVQRVAMAIAPRVGSTLGLRNLSGTTEVLTLVKRIVGSYRINFGMDLLRKQPSNDEELFKMVWHHSDALICCTCKSLPEFIFANEAALDMLETTSGGLHDLRWDQTLDETERKNAYSDITKVMQQGFAYLPAGIRLSSMGRPVAYERAMAWSVANDSESMPCVAFMFVNWSF*

Protein Length: 622

Fln nts: AGCAGGGTTGCAGATGTTCTTAAAGATCGCCTGGATGGTTCTGTGATACCCGTCGAATGGAAATTTTAGGTGCATTCACAACTAGCAGTGGTGCAACGGTGGAGTTGTTGTACTCTCAGATGTATTCTCCAACCACTCTTACCCAAGCTCGAGACTTTTGCACATTACGATATACGTCGGTACTCGAGGACAGAAACTTGGTGGTTTGTGAACGTTCACTGAACCTGGGTATGGTACCTCCAAATGAAGGTTTTGTCAGAGCAGAGATGCTTTCAAGTGGATATTTAATCCGTCCATGTGGAGGTGTTGGATCAATTGTTTACATTGTTGATCACATGGACCTGGAGGCAGGACGAGCTCCAGAGGTATTAAGGCCTATGTATGAATCTTCTGCTATTCTTGCACAAAAAATGACTATTGCTGCCTTACGTCATTTACGTTCCTTAGCACAAGAGGCTGCTGGTGAGGTTGTGACTGGAGGTACTCTACAACCAGCTGCACTGCGAGCGCTGAGCCTTCGGATTGCCCGGAGCTTCAATGATGCTATAAACAGTTTTCCTGAAGATGGCTGGTTTTCAGTTGCTAGCGACGGGATGGATGATATCAGTATTTCACTTAATTCATCATGGAGTCCTAGAACAGTTGGTCTCAAGTGCAGTTCGTCCAACAACTTGTGGTCTGATGGTGATGGGGGTGTTTTATGTGCCAAGGCTTCGATGCTTTTGCAGAATGTTCCTCCAGCAGTATTGATACGTTTCCTTCGAGAGCATCGGTCGGAGTGGGCAGATTGGGCAGACTGTGAACATGATATGAGCTGTTCAGCCACATTGCGAACTCGTGTATATGGTGCTGCAGCTTTAGCTGGAGCTGAACTTGGCAGACGAGAAGTACCTATGCCTCTAGCCCATTCTGAACATCAAGAGATAATGGAGTTAGTCAAGTTTGAAGGTTATGACTCTGCTCGAGATGGTGCTTTAGTGTCAAAGGAGATGTACTTACTCCAGCTTTGCAATGGCATCGACGAAACTGCTATTGGTGATTGTGCACAGCTAGTTTTTGCCCCTGTTGATGGTGCCCTGTCTGATGATATACCATTGTTGCCATCTGGCTTTCGTGTCATACCGCTAGATACTGGCTTTATGGATGGATATGGTCCGTCTTGCACCCTCGATTTAGCTTCCATGCTGGATGGTGGTTCAGATATGGATGCGGCAAAGACTGAAACTGGAATTTCGGCTAACAATATGCGCTCTATTGTCACCATTGCATTTCAGTTTGGTTATGAGACACATAACTGTGACAGTGTGTCAGTTGCTGCCCACAAGTACATGCGTACTGTTGTTGCTTCTGTTCAGCGTGTTGCAATGGCAATCGCTCCCAGAGTGGGCTCAACACTGGGTTTAAGAAATCTTTCTGGGACCACTGAAGTTCTGACACTTGTCAAACGAATTGTTGGTAGCTACAGGATAAACTTTGGGATGGATCTCTTAAGGAAACAGCCTTCGAATGATGAGGAGCTCTTCAAGATGGTGTGGCACCATTCTGATGCTCTTATATGTTGCACATGCAAGTCATTACCAGAATTCATATTTGCAAATGAAGCAGCTTTAGATATGCTGGAGACTACATCTGGAGGTTTACATGACCTGAGGTGGGATCAGACTCTAGATGAAACAGAAAGGAAAAATGCTTATTCAGATATTACCAAAGTTATGCAGCAGGGATTTGCATACCTCCCAGCTGGAATTCGCCTTTCAAGTATGGGTCGACCTGTTGCTTACGAGAGAGCGATGGCATGGAGTGTAGCCAATGACAGTGAAAGCATGCCATGTGTTGCTTTCATGTTCGTTAATTGGTCATTTTGA___TTCAGTTTTATAGGAACTGTTACAGACCCTTCTCAGTAATGGCCACTCCATATATATTGCCAGATTGTTAATACTTTTTGCATGAGTAGCTTGGTTTCTGAAATAAAAAACCATCATAAAGGTGGTACGTATAATGAATATAGTTTACTGAACAAATTCCATAGCTAAAAAAGTGGTTGTTCGAGCCAA

Fln Alignment:

Contig16093___PGWFCDTRRMEILGAFTTSSGATVELLYSQMYSPTTLTQARDFCTLRYTSVLEDRNLVVCERSLNLGMVPPNEGFVRAEMLSSGYLIRPCGGVGSIVYIVDHMDLEAGRAPEVLRPMYESSAILAQKMTIAALRHLRSLAQEAAGEVVTGGTLQPXXXXXXXXXXXXXFNDAINSFPEDGWFSVASDGMDDISISLNSSWSPRTVGLKCSSSNNLWSDGDGGVLCAKASMLLQNVPPAVLIRFLREHRSEWADWADCEHDMSCSATLRTRVYXXXXXXXXXXXXXXVPMPLAHSEHQEIMELVKFEGYDSARDGALVSKEMYLLQLCNGIDETAIGDCAQLVFAPVDGALSDDIPLLPSGFRVIPLDTGFMDGYGPSCTLDLASMLDGGSDMDAAKTETGISANNMRSIVTIAFQFGYETHNCDSVSVAAHKYMRTVVASVQRVAMAIAPRVGSTLGLRNLSGTTEVLTLVKRIVGSYRINFGMDLLRKQPSNDEELFKMVWHHSDALICCTCKSLPEFIFANEAALDMLETTSGGLHDLRWDQTLDETERKNAYSDITKVMQQGFAYLPAGIRLSSMGRPVAYERAMAWSVANDSESMPCVAFMFVNWSF
E7DX27_______________PGWFCDCRRMEILGAFTTSSGATVELLYSQMYSPTTLTQARDFCTLRYTSVLEDRNLVVCERSLNLGMVPPNEGFVRAEMLSSGYLIRPCGGVGSIVYIVDHMDLEAGRAPEVLRPMYESSAILAQKMTISALRHLRSLAQEAAGEVVTGGTLQPAALRALSLRIARSFNDAINSFPEDGWFSVASDGIDDISISLNSSWSPRTVGLKCSSSNNLWSDGDGGVLCAKASMLLQNVPPAVLIRFLREHRSEWADWADCEHDVSCSATLRTRVYGAAALGGAELGRREVPMPLAHSEHQEIMELVKFEGYDSARDGALVSKEMYLLQLCNGIDETAIGDCAQLVFAPVDGALSDDIPLLPSGFRVIPLDTDFMDGYGMSCTLDLASMLEGGSDMDAAKTETGISSNNLRSIVTIAFQFGYETHNCDSVSVAARKYMRTVVASVQRVAMAIAPRVGSTLGLRNLSGTSEVLTLVKRIVGSYRINFGMDLLRKQPSNNEELFKMVWHHSDALICCTCKSLPEFIFANEAALDMLETTSGGLQDLRWDQTLDETEKKNAYSDITKVMQQGFAYLPAGIRLSSMGRPVAYERAMAWSIVDDNESMPCVAFMFVNWSF

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
732	16	83			0.994512
750			66	33	1.0
754	16			83	0.994512
755		16	83		0.994512
758	83			16	0.994512
1051		80		20	0.995493
1251	83			16	0.994512
1252	16			83	0.994512
1342	16	83			0.994512
1345			16	83	0.994512
1346			16	83	0.994512
1464	83			16	0.994512
1644	14			85	0.993533
1646	90		10		0.90298
1647		90	10		0.90298
1648	90		10		0.90298
1920		63		36	1.0
1936		18		81	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain