SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16064

Length: 1483 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16064

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine carboxypeptidase-like 45 [Arabidopsis thaliana] ref\|NP_973926.1\| serine carboxypeptidase-like 45 [Arabidopsis thaliana] sp\|Q93Y09.1\|SCP45_ARATH RecName: Full=Serine carboxypeptidase-like 45; Flags: Precursor gb\|AAL24336.1\| serine carboxypeptidase I	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Serine carboxypeptidase, putative	-	-	1.686e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	3.209e-13	-
Sma3	Carboxypeptidase D.	EC:3.4.16.6	-	6.799e-18	-

Source	Gene names
Sma3	At1g28110; At1g43780; At2g33530; At5g42230; At5g42240; F13K9.20; F28H19.3; F28H19.5; F4P9.30; GSVIVT00006179001; GSVIVT00014292001; GSVIVT00018026001; GSVIVT00020893001; GSVIVT00020894001; GSVIVT00023266001; GSVIVT00023268001; GSVIVT00023270001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G28110.1	SCPL45 serine carboxypeptidase-like 45 chr1:9804153-9806832 REVERSE LENGTH=461	59%
RefSeq	Arabidopsis thaliana	NP_564298.1	serine carboxypeptidase-like 45 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002318164.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM39

Fln msg: Separated hits, possible frame ERROR between 281 and 284, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 416 - 460

Fln protein: S*PWLSLTLFYYFVEAETDSNLKPLVVWLNGGPGCSSFGVGALSENGPFHPRGGKLITNEYSWNKEANMLYLETPAGVGFSYSKDPSYYMGGxxSTTAADNVLFLHGWFKKFPEYKMRELYLTGESYAGHYIPQLAELIVEQNRKEKIFNLKGIAIGNPLLDFVTDLNAREEFLWSHGLVSDPTYNMMKTRCNYSSLLREAIRGTVSLTCDQIYSIVSMEISKYINKYDVTIESCLSSLLMQKSKMMFGVTGTTTVKPDVCVQDEATSYLNTPAVQKAFHARLVGSVKGWEACSSVLEYDDRNMENPTIPLLGKLVMAGTRVLVYSGDQDSIIPLTGTRTLVNNLATSLKLNTTVPYSVWFQGKQVAGWVQVYGNILSFATVRGASHEVPFSQPERSLVLFKAFLQGQTPPSVMM*

Protein Length: 417

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCTATTCTATTACTTTGTAGAAGCTGAGACAGACTCAAATTTGAAGCCTTTGGTTGTATGGCTCAATGGAGGGCCTGGGTGTTCTTCATTCGGCGTTGGGGCGCTATCCGAGAATGGTCCATTTCATCCCAGGGGAGGCAAATTGATTACGAATGAGTACAGCTGGAACAAAGAAGCAAACATGCTTTATCTGGAGACTCCGGCTGGAGTTGGATTTTCATATTCTAAAGATCCATCATACTATATGGGTGGTTCxxxCTCCACAACAGCTGCCGATAACGTGCTATTTCTTCATGGTTGGTTTAAAAAGTTTCCAGAGTACAAGATGAGAGAGCTATATTTGACAGGGGAAAGCTATGCAGGTCACTATATTCCTCAATTGGCAGAGCTTATTGTGGAGCAGAACAGAAAAGAGAAGATCTTCAATCTGAAGGGTATAGCTATTGGCAACCCATTGCTTGATTTCGTCACAGATCTAAATGCAAGGGAGGAATTCCTATGGTCACATGGCCTTGTATCTGATCCAACATACAACATGATGAAAACGCGCTGCAATTATAGTAGCCTTCTGAGAGAGGCCATCAGAGGCACAGTGTCATTGACCTGTGATCAAATTTACTCGATTGTCAGCATGGAAATCAGCAAATACATTAATAAATACGACGTCACAATCGAAAGCTGTTTGTCATCTCTTCTCATGCAGAAATCTAAGATGATGTTCGGGGTGACAGGAACCACGACAGTAAAGCCAGACGTTTGCGTACAGGACGAAGCTACCTCCTATCTGAATACGCCCGCTGTACAAAAAGCATTCCATGCTCGGCTTGTTGGAAGTGTTAAAGGATGGGAAGCCTGCAGCAGTGTACTGGAATATGATGATCGTAATATGGAGAACCCAACTATTCCTTTACTTGGAAAACTTGTCATGGCTGGCACACGAGTCTTGGTTTACAGTGGAGATCAGGACTCTATCATACCTCTAACTGGTACACGCACATTGGTAAACAATCTTGCTACTTCTCTGAAACTAAATACAACAGTTCCCTACAGTGTTTGGTTTCAAGGAAAGCAGGTGGCAGGATGGGTGCAGGTTTACGGAAATATTTTATCATTCGCAACAGTGAGAGGGGCATCTCATGAAGTGCCATTTTCTCAGCCAGAGAGATCTTTAGTGTTATTCAAGGCATTCCTGCAAGGCCAAACTCCTCCCAGTGTCATGATGTGAATGGATAATGTAAAATACAAATAGATGTACTGATCAGGGGTGAACGACTTGCTGTGTTTAGTGTATTCATACTGTGCCTGTATATTAGATATTGACCAGCTTTGAAGCAAGCAACTTTGTGTCACAGGGTCTGCTTTGTGCTGCTTTCTAAATGGTGTGTGAGGAGTTGGTTAGAAGATTTTTGTGCAAATGATATTTCCATGTAAGTCAGGGATTTCTATATATGTTCAAATC

Fln Alignment:

Contig16064___LFYYFVEAETDSNLKPLVVWLNGGPGCSSFGVGALSENGPFHPRGGKLITNEYSWNKEANMLYLETPAGVGFSYSKDPSYYMGGSxSTTAADNVLFLHGWFKKFPEYKMRELYLTGESYAGHYIPQLAELIVEQNRKEKIFNLKGIAIGNPLLDFVTDLNAREEFLWSHGLVSDPTYNMMKTRCNYSSLLREAIRGTVSLTCDQIYSIVSMEISKYINKYDVTIESCLSSLLMQKSKMMFGVTGTTTVKPDVCVQDEATSYLNTPAVQKAFHARLVGSVKGWEACSSVLEYDDRNMENPTIPLLGKLVMAGTRVLVYSGDQDSIIPLTGTRTLVNNLATSLKLNTTVPYSVWFQGKQVAGWVQVYGNILSFATVRGASHEVPFSQPERSLVLFKAFLQGQTPPSVMM
B8LM39_______________LFYYFVEAETEPDLKPLVVWLNGGPGCSSFGVGALSENGPFYPKAGKLIRNSCSWNKEANMLYLESPAGVGFSYSNDPSYYMGANxSKTAVDNLLFLHGWFNKFPEYKTRELYLTGESYAGHYIPQLAELIVEENRKKKSFNLKGISIGNPLLDFITDLNARAEFLWSHGLVSDPTYNMMKTGCNYSRLLDEAFRGGVSSTCEHIYLTVSMEISKFIDKYDVTLESCLSSLLMQKSKMMIGVTRTATVKPDVCVQDEATSYLNMADVQKAFHARLVGNVKTWEACSDVLEYDDLNWEIPTIPLLGKLVKAGIRVLIYSGDQDSIIPLTGTRTLVNNLAASLQLNTTVPYRVWFQGKQVAGWVQVYGNTLSFATVRGAGHEVPFSQPERSLVLFKAFLQGQPPPSIMM

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
713		10		90	0.90298
838	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain