SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16051

Length: 3042 nt

UniGene Fasta

>sp_v3.0_unigene16051
CGGTGGGGCTTTATTCAAAATACATTGCCTTTAGTGTTGGTCGCTCGGAGTGGTGGGTGAAAGCAGGAAGGGGAGGCCATCTGATGCGAACCATCAGATCTCATTAATTTCTGCGGAGATCTTCTTCTGCATCTTTCTCTTCTCTGTGGTTGTTCCCTTTCTATCATTTCATCCTTTAAAATCTACGATGGCGAGCTTAATACCTGGAGAATCATCTGAAGGGAAGGGAACAAAGAAAGACTTTAGCACTGCAATACTTGAGCGTAAGAAGTCTCCTAATCGGTTAGTTGTGGATGAAGCCATAAATGATGATAACTCGGTTGTGGCTCTTAATTCGAAAACAATGGAAACATTGCAGCTTTTCCGGGGTGATACCATTCTTGTTAAGGGTAAAAAGAGAAAGGATACAGTTTGCATTGTTCTGGCTGATGATACCTGTGAAGAGCATAAGATCAGAATGAACAAAGTTGTTAGGTCAAATCTAAGAGTAAGATTAGGGGATGTAGTATCTGTTCATCAGTGCCCAGATGTTAAGTATGGGAAGCGTGTGCATATTCTTCCTATAGATGACACAATTGAAGGTGTTACAGGAAACTTGTTCGATGTGTACTTGAAGCCTTACTTCTTGGAAGCCTATCGCCCAGTAAGAAAAGGAGACCTTTTTCTAGTACGAGGAGGAATGAGAAGTGTAGAATTTAAAATCATTGAGACAGATCCTGGTGAGTATTGTGTTGTTTCTCCAGATACTGAAATTTTTTGTGAGGGAGAGCCAATAAAACGAGAAGATGAAGACAGATTGGATGACGTTGGCTATGATGATGTTGGTGGTGTAAGGAAACAAATGGCACAGATCAGAGAACTAGTTGAATTACCACTAAGGCATCCACAACTTTTCAAATCCATTGGTGTTAAGCCCCCTAAGGGTATTTTGCTTTATGGTCCTCCTGGTTCAGGAAAAACCTTGATTGCTAGGGCAGTGGCAAATGAGACTGGAGCTTTCTTTTTTCTAATTAATGGTCCTGAAATTATGTCAAAGCTTGCTGGAGAAAGTGAAAGCAATCTTAGAAAGGCTTTTGAAGAAGCAGAGAAGAATGCCCCTTCTATCATTTTCATTGATGAAATTGACTCCATAGCTCCAAAGAGGGAGAAAACAAATGGTGAAGTAGAGAGGCGCATTGTATCTCAACTATTGACATTGATGGATGGTCTAAAATCTCGATCTCATGTGATTGTCATGGGAGCAACAAATAGGCCTAACAGCATTGATCCAGCACTTAGAAGGTTTGGTAGGTTTGATCGTGAAATTGACATTGGGGTTCCAGATGAAGTTGGCCGACTGGAAGTTCTTCGCATCCACACAAAGAATATGAAGCTTTCTGAAGATGTTGATCTTGAACGTATTTCGAAGAATACACATGGCTATGTTGGGGCAGATCTTGCAGCTCTTTGCACTGAGGCTGCACTGCATTGTATTAGGGAAAAAATGGATGTCATTGACTTGGAAGATGAAACTATTGATGCGGAAGTTCTGAATTCTATGGCTGTTACAAATGAGCACTTTCAGGCTGCACTGGGCTCTAGTAACCCTTCTGCCCTGCGTGAGACTGTTGTGGAGGTGCCAAATGTTTCTTGGGAGGATATTGGGGGTCTGGAAAATGTCAAAAGAGAGCTTCAGGAGACTGTGCAATATCCGGTGGAACATCCAGAGAAATTCGAGAAGTTTGGTATGTCTCCCTCTAAAGGTGTTCTATTCTATGGACCTCCTGGTTGTGGTAAGACGCTTCTGGCAAAGGCCATTGCCAATGAGTGTCAGGCCAACTTTATCAGTGTGAAAGGCCCAGAGCTCCTAACAATGTGGTTTGGAGAAAGTGAAGCCAATGTGCGTGATATTTTTGATAAGGCTAGGCAGTCAGCACCTTGTGTCCTTTTTTTGATGAGCTTGATTCGATTGCTACCCAGCGTGGTAGTAGTGCGGGAGATGCTGGGGGTGCGGCAGACAGAGTTTTGAATCAGTTGCTGACTGAGATGGATGGCATGTCTGCCAAGAAAACTGTTTTCATTATTGGAGCTACGAATCGCCCTGACATTATTGATTCGGCTTTATTACGACCTGGTCGCCTTGATCAATTAATATACATACCCTTGCCTGATGAAGCTTCCCGCTTTCAAATCTTTAAAGCATGTTTGCGGAAGTCACCTGTTGCAAAGGATGTTGAAATTGTGACTCTTGCTCAATACACACAAGGATTTAGTGGAGCTGATATTACTGAAATTTGTCAGCGTGCTTGCAAATATGCTATTAGAGAACATATTGAGATGGACATTGAAAGGGAAAGGAAAAGAAAGGAAAACCCTGAAGCCATGGATGAAGATGAAACTGAAGTTGCAGAAATAAAGGCAGCTCATTTTGAGGAATCAATGAAATATGCCAGAAGGAGTGTTAGCGATGCAGATATACGTAAATATCAAGCATTTGCTCAAACATTACAGCAATCTCGAGGTTTTGGGTCAGAATTCCGGTTCACAGATCAGATTATTACTACCACAGGCAGTGCAGGCACCACAGATGCTCTTGTTACACAACGTGCTGTTGATGATGATGATCTGTACAGTTGAAATGGTGAATTACAGGATCACAAAATTATAGGGCTTGTAACATTTTGAGCCAGTATTCTGTGCTTAGCATTTTAACACCACACTTCTGATTCATCACCCAAGTTTCAGAATGTTTGGTATTTGTGATCTTGGTGTATACTCTTGGCATCCATTTCATACATCCTTCACCCCATTGTCACACACTTCCATGCATCCGTTGATCTGTTACTTCGTGATAGATTTGGATTTATCATTTATTTATTTTCAAATTGGCAGCTAGATGCATTTTTACGTTTATTCAAATAAATGCACAACGTTGACATTACAAAATTGATGATGCTTTCTTTTTCACTCTGAAGTTGATGTCTATTAATCACCTGGCACCATAAATTGGTCTAATTGCTAGTCGTCGTTCTAATAGCATCTAGCCTTGGTTTTGTGTGTGAG

Ace file of the UniGene sp_v3.0_unigene16051

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG0464 ATPases of the AAA+ class	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Cell division cycle protein 48	-	-	7.867e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	9.032e-18	-

Source	Gene names
Sma3	AT3G09840; AT4g29040; At2g03670; At2g20140; At3g01610; At3g09840; At3g53230; At4g29040; At5g03340; At5g19990; At5g20000; At5g58290; AtSUG1; BRAT3501; CAFP; CDC48; CDC48A; CDC48B; CDC48C; CDC48D; CDC48E; CHLREDRAFT_120247; CHLREDRAFT_134171; CHLREDRAFT_240

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G09840.1	CDC48, ATCDC48, CDC48A cell division cycle 48 chr3:3019494-3022832 FORWARD LENGTH=809	93%
RefSeq	Arabidopsis thaliana	NP_187595.1	cell division control protein 48-A [Arabidopsis thaliana]	93%
RefSeq	Populus trichocarpa	XP_002323472.1	predicted protein [Populus trichocarpa]	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVV9

Fln msg: your sequence is longer than subject: 607 - 416

Fln protein: MASLIPGESSEGKGTKKDFSTAILERKKSPNRLVVDEAINDDNSVVALNSKTMETLQLFRGDTILVKGKKRKDTVCIVLADDTCEEHKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDVYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKIIETDPGEYCVVSPDTEIFCEGEPIKREDEDRLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLERISKNTHGYVGADLAALCTEAALHCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQAALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARQSAPCVLFLMSLIRLLPSVVVVREMLGVRQTEF*

Protein Length: 608

Fln nts: CGGTGGGGCTTTATTCAAAATACATTGCCTTTAGTGTTGGTCGCTCGGAGTGGTGGGTGAAAGCAGGAAGGGGAGGCCATCTGATGCGAACCATCAGATCTCATTAATTTCTGCGGAGATCTTCTTCTGCATCTTTCTCTTCTCTGTGGTTGTTCCCTTTCTATCATTTCATCCTTTAAAATCTACG_-_ATGGCGAGCTTAATACCTGGAGAATCATCTGAAGGGAAGGGAACAAAGAAAGACTTTAGCACTGCAATACTTGAGCGTAAGAAGTCTCCTAATCGGTTAGTTGTGGATGAAGCCATAAATGATGATAACTCGGTTGTGGCTCTTAATTCGAAAACAATGGAAACATTGCAGCTTTTCCGGGGTGATACCATTCTTGTTAAGGGTAAAAAGAGAAAGGATACAGTTTGCATTGTTCTGGCTGATGATACCTGTGAAGAGCATAAGATCAGAATGAACAAAGTTGTTAGGTCAAATCTAAGAGTAAGATTAGGGGATGTAGTATCTGTTCATCAGTGCCCAGATGTTAAGTATGGGAAGCGTGTGCATATTCTTCCTATAGATGACACAATTGAAGGTGTTACAGGAAACTTGTTCGATGTGTACTTGAAGCCTTACTTCTTGGAAGCCTATCGCCCAGTAAGAAAAGGAGACCTTTTTCTAGTACGAGGAGGAATGAGAAGTGTAGAATTTAAAATCATTGAGACAGATCCTGGTGAGTATTGTGTTGTTTCTCCAGATACTGAAATTTTTTGTGAGGGAGAGCCAATAAAACGAGAAGATGAAGACAGATTGGATGACGTTGGCTATGATGATGTTGGTGGTGTAAGGAAACAAATGGCACAGATCAGAGAACTAGTTGAATTACCACTAAGGCATCCACAACTTTTCAAATCCATTGGTGTTAAGCCCCCTAAGGGTATTTTGCTTTATGGTCCTCCTGGTTCAGGAAAAACCTTGATTGCTAGGGCAGTGGCAAATGAGACTGGAGCTTTCTTTTTTCTAATTAATGGTCCTGAAATTATGTCAAAGCTTGCTGGAGAAAGTGAAAGCAATCTTAGAAAGGCTTTTGAAGAAGCAGAGAAGAATGCCCCTTCTATCATTTTCATTGATGAAATTGACTCCATAGCTCCAAAGAGGGAGAAAACAAATGGTGAAGTAGAGAGGCGCATTGTATCTCAACTATTGACATTGATGGATGGTCTAAAATCTCGATCTCATGTGATTGTCATGGGAGCAACAAATAGGCCTAACAGCATTGATCCAGCACTTAGAAGGTTTGGTAGGTTTGATCGTGAAATTGACATTGGGGTTCCAGATGAAGTTGGCCGACTGGAAGTTCTTCGCATCCACACAAAGAATATGAAGCTTTCTGAAGATGTTGATCTTGAACGTATTTCGAAGAATACACATGGCTATGTTGGGGCAGATCTTGCAGCTCTTTGCACTGAGGCTGCACTGCATTGTATTAGGGAAAAAATGGATGTCATTGACTTGGAAGATGAAACTATTGATGCGGAAGTTCTGAATTCTATGGCTGTTACAAATGAGCACTTTCAGGCTGCACTGGGCTCTAGTAACCCTTCTGCCCTGCGTGAGACTGTTGTGGAGGTGCCAAATGTTTCTTGGGAGGATATTGGGGGTCTGGAAAATGTCAAAAGAGAGCTTCAGGAGACTGTGCAATATCCGGTGGAACATCCAGAGAAATTCGAGAAGTTTGGTATGTCTCCCTCTAAAGGTGTTCTATTCTATGGACCTCCTGGTTGTGGTAAGACGCTTCTGGCAAAGGCCATTGCCAATGAGTGTCAGGCCAACTTTATCAGTGTGAAAGGCCCAGAGCTCCTAACAATGTGGTTTGGAGAAAGTGAAGCCAATGTGCGTGATATTTTTGATAAGGCTAGGCAGTCAGCACCTTGTGTCCTTTTTTTGATGAGCTTGATTCGATTGCTACCCAGCGTGGTAGTAGTGCGGGAGATGCTGGGGGTGCGGCAGACAGAGTTTTGA___ATCAGTTGCTGACTGAGATGGATGGCATGTCTGCCAAGAAAACTGTTTTCATTATTGGAGCTACGAATCGCCCTGACATTATTGATTCGGCTTTATTACGACCTGGTCGCCTTGATCAATTAATATACATACCCTTGCCTGATGAAGCTTCCCGCTTTCAAATCTTTAAAGCATGTTTGCGGAAGTCACCTGTTGCAAAGGATGTTGAAATTGTGACTCTTGCTCAATACACACAAGGATTTAGTGGAGCTGATATTACTGAAATTTGTCAGCGTGCTTGCAAATATGCTATTAGAGAACATATTGAGATGGACATTGAAAGGGAAAGGAAAAGAAAGGAAAACCCTGAAGCCATGGATGAAGATGAAACTGAAGTTGCAGAAATAAAGGCAGCTCATTTTGAGGAATCAATGAAATATGCCAGAAGGAGTGTTAGCGATGCAGATATACGTAAATATCAAGCATTTGCTCAAACATTACAGCAATCTCGAGGTTTTGGGTCAGAATTCCGGTTCACAGATCAGATTATTACTACCACAGGCAGTGCAGGCACCACAGATGCTCTTGTTACACAACGTGCTGTTGATGATGATGATCTGTACAGTTGAAATGGTGAATTACAGGATCACAAAATTATAGGGCTTGTAACATTTTGAGCCAGTATTCTGTGCTTAGCATTTTAACACCACACTTCTGATTCATCACCCAAGTTTCAGAATGTTTGGTATTTGTGATCTTGGTGTATACTCTTGGCATCCATTTCATACATCCTTCACCCCATTGTCACACACTTCCATGCATCCGTTGATCTGTTACTTCGTGATAGATTTGGATTTATCATTTATTTATTTTCAAATTGGCAGCTAGATGCATTTTTACGTTTATTCAAATAAATGCACAACGTTGACATTACAAAATTGATGATGCTTTCTTTTTCACTCTGAAGTTGATGTCTATTAATCACCTGGCACCATAAATTGGTCTAATTGCTAGTCGTCGTTCTAATAGCATCTAGCCTTGGTTTTGTGTGTGAG

Fln Alignment:

Contig16051___QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR-----EKTNGE---VERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLERISKNTHGYVGADLAALCTEAALHCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQAALGSSNPS
A9NVV9_______________KLQQAVEWPIKHAAAFARLGISPARGVLLHGPPGCSKTTLVNAAAHASQANLFSLSGAELYSMYVGEGEALLRETFQRARLAAPSIIFFDEADAIAAKRNGREEENSSGNGAAVGERLLSTLLTEIDGLEITKGVLVLGATNRPEAIDAALMRPGRFDLVLYVPPPDLEGRIEVLRVHTRNMKLEINVDLPQIAKKTQLFTGAELAGLCREAAIVALRE-----DICADT----------VCSRHFELARNSLRPS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
287			20	80	0.995493
321		14		85	0.993533
382		14		85	0.993533
425	10		90		0.90298
448		10		90	0.90298
795		12	87		0.992554
1278	33		66		0.997452
1443		90	10		0.90298
1446	10			90	0.90298
1448			10	90	0.90298
1451	90	10			0.90298
1453			10	90	0.90298
1464			10	90	0.90298
1467	90			10	0.90298
1469			10	90	0.90298
1479	72			9	0.999994
2136	80		20		0.995493
2572		4		95	0.997218
2624	2		96		0.997626
2625	97	2			0.999697
2862		96		3	0.99245
2882		2		82	1.0
2926	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
2592	2604	TGA TGA TGA TGA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain