SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15959

Length: 828 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene15959 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Immediate-early fungal elicitor protein CMPG1 (Fragment) n=1 Tax=Petroselinum crispum RepID=Q94G57_PETCR	-	-	7.0e-19	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19380.1	PUB25 plant U-box 25 chr3:6714602-6715867 REVERSE LENGTH=421	1.0e-16	49%
RefSeq	Arabidopsis thaliana	NP_566632.1	U-box domain-containing protein 25 [Arabidopsis thaliana]	2.0e-16	49%
RefSeq	Populus trichocarpa	XP_002302926.1	predicted protein [Populus trichocarpa]	5.0e-16	47%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
363	33			66	0.997452
364		33	66		0.997452
366	66			33	0.997452
699		20	80		0.995493
701		20		80	0.995493
702	20		80		0.995493
703		80		20	0.995493
743			50	50	1.0
777	25			75	0.996473
781			75	25	0.996473
782	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain