SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15908

Length: 1229 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15908

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PAP fibrillin family protein	-	-	1.0e-13	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%

Source	GOs	Term	Type	e value	Identity
Sma3	structural molecule activity	GO:0005198	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD02

Fln msg:

Fln protein: MMITNFYSPSLTHGHQTAHPILAWKASNPIKITQTASARPISRTRSGKPHGVLVARCCSSAPPKLKDQLLSTIATSNGTMCEDCMALISSLGKLNPNPDIRLAPHLYSGCFQLISGSFKGTGKPGEAQETVKNTVTLGRAGFNAFKPIDIEIQLKQTYNHVGIEAEDAYYVLIQFSVNSDGISPIEGMFINRGVFSISGSAIMDIRFESSSMVPLNPKRDLDAWLKIFKDVNPTMDEEGSAKVALPPTKGFLEYIYLDDDLRITKGHRGAVVVVKRLQNKVIDL*

Protein Length: 286

Fln nts: GGAAAATGGCCGCTTGTGATTCCTACACCCATATGTAATCAGGTTTGAGAATTACAGTTCATAAATATAACGATGCACATTTTCTGCTGGGGAATGAGCTAAATAACCTGAGTCTCACCAGCATTTTTCAGCTATTTCATGTTCTGCC_-_ATGATGATCACAAATTTCTATTCCCCTTCTCTTACCCATGGACATCAAACTGCTCATCCTATTCTGGCGTGGAAAGCCTCTAATCCCATTAAAATAACTCAGACAGCCTCAGCAAGGCCCATTTCAAGAACCCGGTCCGGGAAACCCCACGGAGTTCTTGTTGCAAGATGTTGCTCCTCTGCGCCTCCTAAGCTGAAGGACCAACTGTTATCTACAATTGCAACCTCTAATGGAACTATGTGTGAGGACTGCATGGCTCTCATATCCTCTCTAGGGAAACTCAACCCTAATCCAGATATCAGACTTGCTCCGCATCTCTACAGTGGCTGCTTCCAATTAATCAGCGGGTCCTTCAAAGGCACTGGCAAGCCTGGAGAAGCTCAGGAAACAGTGAAGAATACAGTTACTCTGGGCAGGGCTGGTTTCAATGCCTTCAAGCCTATCGACATTGAGATTCAGCTGAAACAGACGTATAACCATGTGGGTATAGAGGCCGAAGATGCTTACTATGTGCTAATTCAATTCTCAGTCAATTCAGATGGTATCTCACCCATTGAAGGCATGTTCATAAACAGGGGTGTGTTTAGCATATCTGGTTCAGCCATTATGGATATCAGATTTGAATCCTCTTCTATGGTTCCTCTTAACCCTAAAAGGGATTTGGATGCATGGCTTAAGATCTTCAAAGATGTCAATCCCACTATGGATGAAGAAGGATCTGCAAAGGTGGCTTTGCCCCCTACCAAAGGCTTTCTTGAGTACATTTATCTTGATGATGATCTGAGAATTACAAAGGGCCATAGAGGAGCAGTTGTCGTCGTTAAGAGATTACAGAACAAAGTCATCGATCTGTGA___GATGGGATTTCAGTTCTGTAAGTATTGATGGGTTCAAAACTTCTCATATAGTAAATTGGCAGTGATTTGTAGATACAGTTGTTCATTATGTTAACTGGGTCCAGCTTGACCTTTGTCGGGAGTCTTATCCTACACCCAACATCAATTCCTACCAGTAACATAGTATGTCGTTAACAAGTATATTATTGTATTACACAATGAGTGATTAAGTTATATTTATTCCAAA

Fln Alignment:

Contig15908___MMITNFYSPSLTHGHQTAHPILAWKASNPIKITQTASARPISRTRSGKPHGVLVARCCSSAPPKLKDQLLSTIATSNGTMCEDCMALISSLGKLNPNPDIRLAPHLYSGCFQLISGSFKGTGKPGEAQETVKNTVTLGRAGFNAFKPIDIEIQLKQTYNHVGIEAEDAYYVLIQFSVNSDGISPIEGMFINRGVFSISGSAIMDIRFESSSMVPLNPKRDLDAWLKIFKDVNPTMDEEGSAKVALPPTKGFLEYIYLDDDLRITKGHRGAVVVVKRLQNKVIDL
D5AD02_______________MLITNFYSLSLIHGCQTAHPTLASKASNPIKITRTASAMTISRTQSRKPYGILVARCCSSAPPKLKDQLLSTIATSNGTICEDSMALISSLEKLNPNPDVRLAPHLYSGCFQLISGSFKGTGKPGEAQKIVENTITLGRAAFNAFKPTDIEIQLKQTYNHVGIEAEDAYNVLIQFSVSSDGISPIEGMFINRGVFSISGSAKMDIIFESSAMVPVNPKRDLESWLKIFKDANPTMDEEGSAMVALPPTKGFLDYIYLDDDLRITRGHRGAVVIVQRLQHKVIDL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
163	20			80	0.999996
430	80			20	0.995493
431		80	20		0.995493
639		20		80	0.995493
670		33		66	1.0
775	75		25		0.996473
778		75		25	0.996473
782			25	75	0.996473
786		25		75	0.996473
788	33		66		0.997452
828	80	20			0.995493
829			80	20	0.995493
832		80		20	0.995493
833			20	80	0.995493
834			20	80	0.995493
1048	11			88	0.923564
1051		88		11	0.923564
1228		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain