SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15902

Length: 1496 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15902

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI	-	-	74%
FL-Next	sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Ribosomal protein S8	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8e	IPR001047	-	0.0	-
Sma3	Ribosomal protein S8e, conserved site	IPR018283	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20290.1	Ribosomal protein S8e family protein chr5:6851695-6853012 REVERSE LENGTH=222	77%
RefSeq	Arabidopsis thaliana	NP_197529.1	40S ribosomal protein S8-1 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002299926.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMS2

Fln msg:

Fln protein: MGISRDSLHKKRATGGKKKVWRKKRKYELGRQPSMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYELHYGQDIGRKKKAAAAAAKKDTTEEGEATAEEEKKKSKHLLRKIEKRQEGHKLDTHLEEQFASGRLLAAISSRPGQCGRADGYILEGRELEFYMKKIQRKKGKGAGAA*

Protein Length: 225

Fln nts: TTGGAACTAGAAGCGTCCCATTAAAATTTCCCATAGTCTTTAAACATCTCAATCCTAAACTAAACCATAAATTTCTAATATATAACTAAAATAAGAGTGGTTGAGGATCTCGACTCCAGTTCCAATGGTCTTATTTGGCGTTAATGGGGTTTTCTCTAGCGCATGAAGTAATAAAATACCGATAATATGTGGAAAGGAGCAAAGCAGGTCAAAGGTATATTCTTTGACCTGGCTGGCATACGCAAACCCTAGTCTTGGTATACTGTATACTGGGTTTCATCTCACTTCCATCGCCGTTTATGTTCTTTCGTTCCTCCTCTTCCCTCTCGGTTTTAGGTATAGGGTTGCGGCGGTGCGGTCCGATCTGCAGGGTTTCTGGTCGATTCTGAAACA_-_ATGGGTATCTCACGGGATTCACTTCACAAGAAACGTGCGACTGGAGGGAAGAAGAAGGTGTGGAGGAAGAAGCGAAAGTATGAGTTGGGCAGACAGCCTTCAATGACGAAACTGTCGAGTAACAAGACCGTGAGAAGGGTGCGTGTGAGAGGAGGTAATGTAAAGTGGAGGGCTTTGAGACTCGATACTGGTAACTTTTCTTGGGGTTCTGAGGCTGTGACTCGCAAGACTCGTATATTAGATGTGGTTTACAATGCATCTAATAACGAGCTTGTCAGGACCCAGACTTTGGTAAAGAGTGCCATCATTCAGGTTGATGCTGCTCCTTTCCGTCAGTGGTATGAGCTGCACTACGGTCAGGATATTGGCAGGAAGAAGAAGGCTGCTGCTGCTGCGGCCAAGAAAGATACTACCGAGGAGGGAGAAGCTACAGCCGAGGAGGAGAAGAAAAAAAGCAAACATCTTTTGAGGAAGATCGAGAAGCGACAAGAAGGTCACAAACTTGACACACATCTGGAAGAGCAATTTGCTAGTGGTCGGCTTTTGGCTGCAATTTCTTCACGTCCAGGCCAGTGTGGACGTGCTGACGGGTATATTCTTGAGGGTCGTGAGCTTGAGTTTTACATGAAAAAGATTCAGAGAAAGAAGGGAAAGGGAGCTGGTGCTGCTTAA___AAGCAAGCAAATTTTGGTTCTTGAGACACTTAGCAAGATTAATGAATAATCTTGCTCTGTTCACAATGTTCAGTGTTGCCCCCAAGTAACATCAAAAGAGCTTTATAGTTAGGATTGAGGATAATTTTTGTGGTCACGGGTCATGGTTCTATTTTCAACTGAGCAGAGTATAGTAATTACAAATTTGTTAGATAGCTGGATTTTAATTTATTTTCTAATGGAATGTCAGACTGAAGAACAATTTGAAGCGTCACGTAAGATTGCTAATCTGCTGAACAGCACTTTAGTTTTTACTGTCAGATTTGATGGTTTGAAGTGTCATGCAAGATTGCTAATCTGCTGAATGGTCCTTTAGTTTTTATTTCCATATCTTCTGCCTGCCATTGCTAATTTTCATTTTTGACTAATACATTCAGTGCTTTCTTATTGTT

Fln Alignment:

Contig15902___MGISRDSLHKKRATGGXXXXXXXXXXYELGRQPSMTKLSSNKTXXXXXXXXXXXKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYELHYGQDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXSKHLLRKIEKRQEGHKLDTHLEEQFASGRLLAAISSRPGQCGRADGYILEGRELEFYMKKIQR
A9NMS2_______________MGISRDSLHKKRATGGKKKVWRKKRKYELGRQPSMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYEQHYGLDIGR--KKKAAAAKKETTEEGEATAEEEKKKSKHLLKKIEKRQEGHKLDSHLEEQFASGRLLAAIASRPGQCGRADGYILEGRELEFYLKKIQR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
327		25		75	0.996473
693	90	10			0.90298
843	83		2		1.0
983		86		13	0.999973
1364	5		94		0.9982
1447		4		95	0.995881

SSRs (tot: 1)

Start position	End position	Sequence	Length
775	788	GCT GCT GCT GCT GC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain