SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15901

Length: 2476 nt

UniGene Fasta

>sp_v3.0_unigene15901
AGTTCTGGAGTTTTGGGTGTACTCACGCTTAAGCAAAAACCCAGCACATCCACCCTGTTATTAATTTCATTAATTTTCTTCCTAATTAGGACTTGACCCTTCTGTCCGTCCAAGAGGCCAGGGAATGCTCAAGCTACTCGTGTGGCCGCGCAATCCGAAATTATAGCATTGAGTCTCCATGGTTCAACTATAAAATGACAGGGCCCGGGCTGCTCATCTCATTCTCAGCCCTCTCTGTCACCGATCAGCTGAGATTTCAAGTGAGAATTGAGCTTTGAAAAATATTTCCAGTGTGACTACTCGCTCCTACACTCTCAGGAGGGTTGCTAGCAATATTGATTTGCCCACGATGAATGCTCTGGCTGCAACAAATCGTAATTTCAAGCGAGCAGCTCGGCTTCTGGCGTTGGATTCCAAGCTTGAAAAAAGTTTGCTCATTCCTTTTCGAGAGATCAAGGTTGAGTGCACCATTCCTAAAGATGATGGAACTTTAGCCTCATATGTAGGCTTTAGGGTGCAACATGACAATGCACGGGGACCCATGAAGGGAGGGATACGCTACCATCCAGAGGTTGATCCGGATGAGGTAAATGCCTTAGCACAACTAATGACATGGAAGTCTGCTGTAGCTAACATACCATATGGGGGAGCAAAGGGTGGTATTGGTTGCGACCCACGGAGTTTAAGTTTCAGTGAGTTAGAAAGGCTTACTCGTGTCTTTACTCAGAAGATCCATGATTTGATTGGAGTCCACATAGATGTTCCAGCACCTGACATGGGAACTAATTCACAGACAATGGCCTGGATATTAGACGAGTATTCAAAATTCCATGGATACTCACCTGCAATTGTTACTGGAAAACCTGTTGATCTAGGTGGATCCCTTGGCAGGGATGCTGCAACTGGTAGAGGTGTTATGTTTGCAACAGAAGCTTTATTAGCTGAGTATGGTAAAAGCATCTCAGGTCAACGTTTTGTAATCCAGGGTTTTGGAAATGTCGGTTCCTGGGCAGCTGAACTTATCCATGAGAAGGGTGGAAAGATTATAGCAGTGAGTGACATTTCAGGAGCTGTAAAGAACAGCAATGGCCTTGACATTCCAGCTTTAATGAAGCACACAAAGACTAATGGTGTTGTTAAAGGATTTGAAGCAGCAGATTCAATTGATCCCAAAACCCTCTTGCTTGAAGACTGTGACGTGCTCATCCCTGCTGCTTTAGGTGGTGTTCTGAACAGGGAGAATGCTAGTGAAGTAAAGGCCAAATTCATTATAGAGGCAGCCAATCATCCCACAGATCCAGAAGCCGACGAGATTCTATACAAGAAGGGTGTTGTAGTACTACCGGACATATATGCAAATTCTGGTGGTGTGACTGTTAGCTATTTTGAGTGGGTGCAGAACATCCAAGGTTTTATGTGGGATGAGCAGAAAGTTAATACTGAGCTGAAAAACTATATGACAAGCGCTTTTCAGCATCTCAAGGAAATGTGTAAAACTCATGATTGTGATCTCCGAATGGGAGCTTTCACTCTTGGAGTCAATCGTGTTGCTCGTGCCACTCTCCTAAGAGGATGGGAAGCTTAAAATACATCCCGCTGATAAACATCAGATTCCTTTCGTCATGTCTCACAGTTCCAATAATTCAACTGGTTACTTTTCTCTGTGTCAACCACATTGTATAGCATTTTAGCCTGGTATTCTTTTGAATATTATATTGTTGCTAGCAAAATTATCAGTCTTTATGATGAGATAGTCACTGGTACCGTTCTACAAAATAATCCATTTTTTTAGTTATTGGGTACAGATTTATAGTTTTCCAACACAGTTCTTGGGGCCTAAAATAACATGCTCTATTGTTATGGGCTCTAGTTGGCTGTTTTCTGAAGGGCCACTTACATTTGAAGAAATAACGGCATGTTTTGATCCCCCCAAAAGAATTTATTTCCTACTAATTTTATCTTACTAATTGGAACATCAGAATCTTAAAAACAGGTATCAGACTCCAATTTGTTTGCAAGGATGGCAAGGCATGCTTTATATCCATAGTTCCTTTTTGAGGATTCAATTACATTTTGATGATTTATGCTCCTCTTAACTTCAAGATATGTCAGTCTGTCTTTTTATGGGTTGCTCCTCGTGTGAATGGGGTGGACACAGCTATATGTATAATCCTATTTTTAGGTTGCAGAGATTTCTTGCTGTTTTGTGTCCACAGCAACACTCTTCTCATGGTGATTTTATAGTTACACGTGTTAGATCAGTTTTGGTTACCCTTCTATGGGTTCTAGTCTTAGAAGAATCTAGAAAATGAGCCATGATTCAATCTTTGTAAGGACCTAAATCATATGTCACAGACAACATTGTGACGTGATCTCTCTGTGATTTATACTTTTCAGTTTCCGAATTCCTTTATTGTTTTCAGTTCCCTTGTATACTCCAGTTTGAACTAAAATCTAAAACATTTGCCATAATAAC

Ace file of the UniGene sp_v3.0_unigene15901

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate dehydrogenase n=4 Tax=Pinaceae RepID=D9IXC9_PINPS	-	-	100%
FL-Next	sp=Glutamate dehydrogenase; Pinus pinaster (Maritime pine).	-	-	100%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	GO:0016639	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase	IPR006095	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal	IPR006096	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain	IPR006097	-	-
Sma3	Glutamate dehydrogenase	IPR014362	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G18170.1	GDH1 glutamate dehydrogenase 1 chr5:6006172-6008248 FORWARD LENGTH=411	85%
RefSeq	Arabidopsis thaliana	NP_197318.1	glutamate dehydrogenase 1 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002319162.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D9IXC9

Fln msg:

Fln protein: MNALAATNRNFKRAARLLALDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKSAVANIPYGGAKGGIGCDPRSLSFSELERLTRVFTQKIHDLIGVHIDVPAPDMGTNSQTMAWILDEYSKFHGYSPAIVTGKPVDLGGSLGRDAATGRGVMFATEALLAEYGKSISGQRFVIQGFGNVGSWAAELIHEKGGKIIAVSDISGAVKNSNGLDIPALMKHTKTNGVVKGFEAADSIDPKTLLLEDCDVLIPAALGGVLNRENASEVKAKFIIEAANHPTDPEADEILYKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWDEQKVNTELKNYMTSAFQHLKEMCKTHDCDLRMGAFTLGVNRVARATLLRGWEA*

Protein Length: 413

Fln nts: AGTTCTGGAGTTTTGGGTGTACTCACGCTTAAGCAAAAACCCAGCACATCCACCCTGTTATTAATTTCATTAATTTTCTTCCTAATTAGGACTTGACCCTTCTGTCCGTCCAAGAGGCCAGGGAATGCTCAAGCTACTCGTGTGGCCGCGCAATCCGAAATTATAGCATTGAGTCTCCATGGTTCAACTATAAAATGACAGGGCCCGGGCTGCTCATCTCATTCTCAGCCCTCTCTGTCACCGATCAGCTGAGATTTCAAGTGAGAATTGAGCTTTGAAAAATATTTCCAGTGTGACTACTCGCTCCTACACTCTCAGGAGGGTTGCTAGCAATATTGATTTGCCCACG_-_ATGAATGCTCTGGCTGCAACAAATCGTAATTTCAAGCGAGCAGCTCGGCTTCTGGCGTTGGATTCCAAGCTTGAAAAAAGTTTGCTCATTCCTTTTCGAGAGATCAAGGTTGAGTGCACCATTCCTAAAGATGATGGAACTTTAGCCTCATATGTAGGCTTTAGGGTGCAACATGACAATGCACGGGGACCCATGAAGGGAGGGATACGCTACCATCCAGAGGTTGATCCGGATGAGGTAAATGCCTTAGCACAACTAATGACATGGAAGTCTGCTGTAGCTAACATACCATATGGGGGAGCAAAGGGTGGTATTGGTTGCGACCCACGGAGTTTAAGTTTCAGTGAGTTAGAAAGGCTTACTCGTGTCTTTACTCAGAAGATCCATGATTTGATTGGAGTCCACATAGATGTTCCAGCACCTGACATGGGAACTAATTCACAGACAATGGCCTGGATATTAGACGAGTATTCAAAATTCCATGGATACTCACCTGCAATTGTTACTGGAAAACCTGTTGATCTAGGTGGATCCCTTGGCAGGGATGCTGCAACTGGTAGAGGTGTTATGTTTGCAACAGAAGCTTTATTAGCTGAGTATGGTAAAAGCATCTCAGGTCAACGTTTTGTAATCCAGGGTTTTGGAAATGTCGGTTCCTGGGCAGCTGAACTTATCCATGAGAAGGGTGGAAAGATTATAGCAGTGAGTGACATTTCAGGAGCTGTAAAGAACAGCAATGGCCTTGACATTCCAGCTTTAATGAAGCACACAAAGACTAATGGTGTTGTTAAAGGATTTGAAGCAGCAGATTCAATTGATCCCAAAACCCTCTTGCTTGAAGACTGTGACGTGCTCATCCCTGCTGCTTTAGGTGGTGTTCTGAACAGGGAGAATGCTAGTGAAGTAAAGGCCAAATTCATTATAGAGGCAGCCAATCATCCCACAGATCCAGAAGCCGACGAGATTCTATACAAGAAGGGTGTTGTAGTACTACCGGACATATATGCAAATTCTGGTGGTGTGACTGTTAGCTATTTTGAGTGGGTGCAGAACATCCAAGGTTTTATGTGGGATGAGCAGAAAGTTAATACTGAGCTGAAAAACTATATGACAAGCGCTTTTCAGCATCTCAAGGAAATGTGTAAAACTCATGATTGTGATCTCCGAATGGGAGCTTTCACTCTTGGAGTCAATCGTGTTGCTCGTGCCACTCTCCTAAGAGGATGGGAAGCTTAA___AATACATCCCGCTGATAAACATCAGATTCCTTTCGTCATGTCTCACAGTTCCAATAATTCAACTGGTTACTTTTCTCTGTGTCAACCACATTGTATAGCATTTTAGCCTGGTATTCTTTTGAATATTATATTGTTGCTAGCAAAATTATCAGTCTTTATGATGAGATAGTCACTGGTACCGTTCTACAAAATAATCCATTTTTTTAGTTATTGGGTACAGATTTATAGTTTTCCAACACAGTTCTTGGGGCCTAAAATAACATGCTCTATTGTTATGGGCTCTAGTTGGCTGTTTTCTGAAGGGCCACTTACATTTGAAGAAATAACGGCATGTTTTGATCCCCCCAAAAGAATTTATTTCCTACTAATTTTATCTTACTAATTGGAACATCAGAATCTTAAAAACAGGTATCAGACTCCAATTTGTTTGCAAGGATGGCAAGGCATGCTTTATATCCATAGTTCCTTTTTGAGGATTCAATTACATTTTGATGATTTATGCTCCTCTTAACTTCAAGATATGTCAGTCTGTCTTTTTATGGGTTGCTCCTCGTGTGAATGGGGTGGACACAGCTATATGTATAATCCTATTTTTAGGTTGCAGAGATTTCTTGCTGTTTTGTGTCCACAGCAACACTCTTCTCATGGTGATTTTATAGTTACACGTGTTAGATCAGTTTTGGTTACCCTTCTATGGGTTCTAGTCTTAGAAGAATCTAGAAAATGAGCCATGATTCAATCTTTGTAAGGACCTAAATCATATGTCACAGACAACATTGTGACGTGATCTCTCTGTGATTTATACTTTTCAGTTTCCGAATTCCTTTATTGTTTTCAGTTCCCTTGTATACTCCAGTTTGAACTAAAATCTAAAACATTTGCCATAATAAC

Fln Alignment:

Contig15901___MNALAATNRNFKRAARLLALDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKSAVANIPYGGAKGGIGCDPRSLSFSELERLTRVFTQKIHDLIGVHIDVPAPDMGTNSQTMAWILDEYSKFHGYSPAIVTGKPVDLGGSLGRDAATGRGVMFATEALLAEYGKSISGQRFVIQGFGNVGSWAAELIHEKGGKIIAVSDISGAVKNSNGLDIPALMKHTKTNGVVKGFEAADSIDPKTLLLEDCDVLIPAALGGVLNRENASEVKAKFIIEAANHPTDPEADEILYKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWDEQKVNTELKNYMTSAFQHLKEMCKTHDCDLRMGAFTLGVNRVARATLLRGWEA
D9IXC9_______________MNALAATNRNFKRAARLLALDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKSAVANIPYGGAKGGIGCDPRSLSFSELERLTRVFTQKIHDLIGVHIDVPAPDMGTNSQTMAWILDEYSKFHGYSPAIVTGKPVDLGGSLGRDAATGRGVMFATEALLAEYGKSISGQRFVIQGFGNVGSWAAELIHEKGGKIIAVSDISGAVKNSNGLDIPALMKHTKTNGVVKGFEAADSIDPKTLLLEDCDVLIPAALGGVLNRENASEVKAKFIIEAANHPTDPEADEILYKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWDEQKVNTELKNYMTSAFQHLKEMCKTHDCDLRMGAFTLGVNRVARATLLRGWEA

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
57	33		66		0.997452
59			33	66	0.997452
60	66		33		0.997452
61			33	66	0.997452
62			33	66	0.997452
218	66		33		0.997452
220		66	33		0.997452
221			33	66	0.997452
222		66	33		0.997452
1634		85	15		1.0
1744	50			40	1.0
1767	11	88			0.923564
1768		88		11	0.923564
1939		33	66		0.997452
1941	66	33			0.997452
1943		33		66	0.997452
1944	33			66	0.997452
2061	80	20			0.995493
2063			80	20	0.995493
2064	80	20			0.995493
2065			20	80	0.995493
2067		80	20		0.995493
2069	80	20			0.995493
2072	80		20		0.995493
2073		80	20		0.995493
2074	80	20			0.995493
2076			20	80	0.995493
2078		20		80	0.995493
2079	20		80		0.995493
2080	80	20			0.995493
2082		20	80		0.995493
2108		11		88	0.923564
2109	88		11		0.923564
2113		77	11	11	0.968132
2115		11	88		0.923564
2116		11		88	0.923564
2117		88		11	0.923564
2120			11	88	0.923564
2122	11			66	0.999999
2124			11	88	0.923564
2126		12		87	0.992554
2128		12		87	0.992554
2129			87	12	0.992554
2130		12	87		0.992554
2131	12		87		0.992554
2138		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain