SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15875

Length: 1554 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15875

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative n=1 Tax=Ricinus communis RepID=B9SHD1_RICCO	-	-	1.0e-19	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Leucine-rich repeat receptor-like kinase	-	-	1.385e-08	-

Source	Gene names
Sma3	AT1G60800; At1g60800; At3g25560; F8A5.31; GSVIVT00002751001; GSVIVT00021194001; GSVIVT00038123001; LRR-RLK; Os01g0171000; OsI_00578; OsJ_00547; OsSERK1; P0583G08.19-1; POPTRDRAFT_1076119; POPTRDRAFT_230613; POPTRDRAFT_820583; POPTRDRAFT_872799; RCOM_04468

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G60800.1	NIK3 NSP-interacting kinase 3 chr1:22383601-22386931 REVERSE LENGTH=632	1.0e-18	57%
RefSeq	Arabidopsis thaliana	NP_176279.1	NSP-interacting kinase 3 [Arabidopsis thaliana]	1.0e-18	57%
RefSeq	Populus trichocarpa	XP_002315684.1	predicted protein, partial [Populus trichocarpa]	2.0e-22	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ80

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 26 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 102 - 172

Fln protein: VFISDQRALDFGQAVKQKVVMLDWVNKLHKEKLHLIADKDLQGNFDRFQIEEMVQVSALCTQFQLGHRPKKCDVLRYRLYITHGVSCACTSSNHFSEISKS*

Protein Length: 103

Fln nts: ATGGGGGCTTGGGGGAACTTCGTTCCCACGGTAGCTTCGGCCCATCAATGTTTGACGATTGGTTTGTTATAAACTTTCGATCTGAAACCCATCACCGCCGAGAACGCTGCCGAACAAGCGAGAACTGTTCGCGCGGCACAGCCCTCCATCACCACCGTAACGGCGCTACCAAGCGTTGATGTTAAAAACTCGAGGGATAAGCCATTAATGCCCCAATTTATGATAAACCCCGGCTTAGTTGCGTGTGGGGTATTTGCCCCCGTTCTGTGCACGATAAGCCCCTCCACGATGGTGAGCTGAGCTTGGTTTACTACGTCTGGTGGTATTATTCAGTTACAAGGAAAAACTCCTCTAGCTTTATCTGCGTTTATTCAGTTGGGTGCTACGAACTCTTGTAGAATTTGAAGAAATAGACGCCGCTGAGGATTTTGATCTTTCGGTGTAGGTTTTCATTTCAGATCAAAGGGCTTTAGATTTTGGTCAGGCTGTAAAGCAGAAAGTTGTAATGCTTGATTGGGTAAACAAGCTTCATAAAGAGAAGTTACACCTTATTGCTGATAAAGATCTTCAGGGCAATTTTGATAGATTTCAGATAGAAGAGATGGTTCAAGTTTCTGCGTTATGCACACAATTTCAGCTTGGACATCGTCCCAAAAAGTGTGATGTTTTGAGGTACAGGCTGTATATTACCCACGGAGTCTCTTGTGCATGTACTTCATCAAATCATTTTTCAGAAATAAGCAAATCATAG___GTCAGAGAGTTATATCACATGAACATCAGGCGTGCCAGGAAAATGTCACCCTAAAAAGCTAAAAAGGCAAGCATTTTTGGCAGCGGCTGATTATAAAATCTGTGTTTTTTGAGAGCAACAAGAATGGTCTGTTGCAATTGTCAATAAAATCAATGATATATACAAGAAGTTATAATAGAGATTAGATTTTTGGCCACCAGGAAATGTAAACCCTGTACTGTTGAGGGGGCAATGCAAAATACCAAATTAGTCTGCTGCCTGCTAGTGTCAGTGCAATTCAAAATGTTTCTTCCTATATTTTCATTGTTGAACTGGTAGCAGAGGTGATGTTCTCAGAGGAAACACTGGATATATTGAACATTATCAACTGCACTACACTAGTTTCCTATCAAAGTTGCAGATTTTACACCAAAATTTATGAATAATTGGGAGTTGATGTCTGGATCATTTTCATCATCTAATGGTGATGAGGTCTCAAATTTGTAAGGTTATGATGCAAATTTTAACTATGAAACGAGCTCAAATGTTGTTAGCTGTTTCCTTTGTTAACTCCGGGTTCCATTGGGTGTTCATTCTGAAGACAAAAGCCATGTGCTACGTTGGTATAAGAGAATGTTATATCTGCAAAGCTTGAAATAACTTCTTACAAAGTGCTTTTTGACTAGGGTTTATATATCGTGCAATTAATGGGCTTCACCTGCCTTCAGAGATGCCATCAGAATTGGGATATGATTTCACGATGCCGTGTGCAAATTACCGTTGGCAACCATTAATTGTAAATACTGAGGACGGTCAATTTAATT

Fln Alignment:

Contig15875___ISDQRALDFGQ-AVKQKVVMLDWVNKLHKEK-LHLIADKDLQGNFDRFQIEEMVQVSALCTQFQLGHRPKKCDVLR
A9NZ80_______________ITGQRAFDLARLASDDDIMLLDWVKGMLRERRLDRLVDPELQSNYEETEVEELIQVALLCTQNSPMERPKMADVVR

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
265		66		33	1.0
396	16			83	0.994512
397	83			16	0.994512
401			50	50	1.0
402	50			50	1.0
427			25	75	0.996473
856			83	16	0.999991
883		83		16	0.999991
906	83		16		0.999991
1077			83	16	0.994512
1133		85	14		0.993533
1134			14	85	0.993533
1135	85		14		0.993533
1171		40		60	1.0
1174		12		87	0.992554
1175			87	12	0.992554
1176	87	12			0.992554
1208	62	37			1.0
1211	37		62		1.0
1254	90	10			0.90298
1255	90		10		0.90298
1257		10		90	0.90298
1258			10	90	0.90298
1260	88		11		0.923564
1263		11		88	0.923564
1264	88			11	0.923564
1269	88		11		0.923564
1271			88	11	0.923564
1272	88		11		0.923564
1273			88	11	0.923564
1275	11			88	0.923564
1277	88			11	0.923564
1278	87	12			0.992554
1296		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain