SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15870

Length: 2588 nt

UniGene Fasta

>sp_v3.0_unigene15870
TGACGAAATGCACCGGGAATGCGAAATCCATTGTTTTTTCCCTCTTTCTACCAGACGTTCGACTTCGACTTGACTGCTCAGTCGTGACGCCCTAAATTTCCACGATCGGCGCCACAGTTTCTCAACAGCCTTTGCCTTTGAGAGGGTGGCGCGTCCCCACCCTCTGTTAGAATATCGTGCGCTTGTGTTCCGAGATTCTCAATGTCGCCGCGCCACTGCGGCAAAAAAAGCAATTTAATTTGTTTGTCAATGGCAGCATTGGAATGCTCTGTCTTCTTTCCTTGATATGCGGATAGTTATGACCCACTCCACTGGCTTTTTCCTCCTTATTTTGCATGATAATATTCCTTCAACAGATGACTCGTGATATTGATCTTCATTGAAATTCTTATAAATCCCCACTCGTTCCCATTCCCGCTGCACACCCACCTAGCAGTTTGAGTTTGTGAGTTTTACTGTCATTTGAGCAATGAAGGTGGTGTGGGAAGCTTGCGTGGCGTTTTCGCTAGCTTATGTTTACATCTTATTATGGATAGGCACCGCAACGGTGGAAGCCACTCCCTTCCATAGAATTATACCTCCACTCCAATCCCTTTATGGCCGACGCGGCCCCTCTCTGTCTCATGACTATAGAGATGCTCTCACCAAATCCATTCTCTTCTACGAAGGTCAGAGATCTGGCAAACTCCCGCTCAACCAGCGAATGAGATGGAGGGCAGATTCTGCCCTTTCGGATGGAGCTGCAGACCACGTGGATCTGACGGGAGGATATTACGACGCAGGAGACAATGTGAAGTTTGGTTTCCCAATGGCTTTCACGACCACCATGTTGTCATGGAGCGTTTTGGAGTTCGGAGGGCGCATGGGGGATAACCTCGACCATGCAAAAGCCGCTATCCGTTGGGCTACAGATTACCTGCTTAAAGCCACTGCACGTCCCGGTGTTATATACGTGCAGGTAGGCGATCCAAACTTAGATCACAAGTGCTGGGAGAGGCCAGAGGACATGGACACATCTCGCAATGTGTATAAAATCGACGCTGATCATCCTGGATCCGACGTTGCCGCAGAAACTGCTGCAGCGCTGGCAGCGGCATCCATGGTGTTCAGAACAACGGATCCCATTTATTCTAGACACCTTCTGCAAACTGCAATGCAGGTATTTGATTTCGCTGACAAACACAGAGGCGCTTACAGTGACTCCCTCCAGTCGGAAGTTTGCCCATTTTATTGCTCATACTCGGGATATAATGACGAATTACTGTGGGGAGCAGCATGGTTGCAAAGAGCCTCAAGGAATTTATCATATATCTCCTACATTCAATCACATGGCCAGAATCTTGGCGCCGAGGATAACGTCAATATATTCAGCTGGGATGAGAAGCATGCAGGAGCGAGGGTTCTTTTGGCCAAGGAAGTTCTGCTAAGAAATTCCAAGTCCCTTGAGGAATACAGGGGCCACGCTGACAACTTCATTTGCTCTCTCTTGCCCGGAACACCAAATTCTCAGGCGCAGTACACACCAGGCGGACTACTTTTCAAAATGAGTGACTGTAATTTGCAATATGTGACGTCCACAACTTTCCTGCTTTTCACTTATGCAAAATACTTGAGAGTTTCCAAGCAAGTGGTGAGATGCGGGAACATGGTAGTCACTCCAACCAGAATACGTACACTTGCAAAAAGACAGGTGGACTACATACTGGGAGACAACCCACTCGGAATGTCATACATGGTGGGCTACGGTGCCAAGTTTCCAGAGCGCATACATCACAGGGGCTCATCTTTGCCTTCGATTTATCAGCATCCCCAAATCATTCCCTGCAACGATGGCTTCCAGTCGTTGTATAGCAACGCTCCCAACCCAAACAGACTCGTTGGCGCTGTCGTGGGAGGCCCCGACAACAATGACCATTTCTCCGATGAGCGCAATGACTATGCTCACTCTGAACCCACCACTTACATCAATGCTCCTTTGGTTGGATCCCTTGCTTATTTGGCACACAGTTTCGCTTAGCATCTGCTTTCTTCCCTTTTCTGTTCTTTAAACTAACTGTTTTCCTGCCCTCCAGTTGTCTTAGTCGTCGTTTTCAATATGCTGTCATCCCTCATTTCTTTCTCTATCAGTTTTTCCTTTGTTTTGCTTCGTTTCAGAGGATGGGGATGATGCTTTATGTCTGTATATTATTCTGCAGCGGATGTCAATTAGCAGCACATGACGAAGTCAGTCAGTTCAAATAGGAAGTCTTTTCTTGAGTGAGTATCGTAGAGTGTGGGAAGCCGTGGGCTACTCTCATCTCACCTTTCATGTCTGCCAAATTTCAATGAAATATGTATAAATTAAATTATGTGTACATGGCGGCACATGGCATTATTACATCACATAAATTTTATTGTTCAATCATGAAAATGGTTTCAGTTGAAAAAAAATCATTGATGGCCATGATCCTCATCAGTGACTTCATTTAGTGGAGAGAAGGGGCCCGGCTTCACCATCTTCCACATTCCACATGCCATGATGCTATTATCTCCAAATACTCAGCTCAAACCTATGAATAGAATAATGAAATGGCTCTACTCATTCATAC

Ace file of the UniGene sp_v3.0_unigene15870

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Endo-beta-1,4-glucanase n=1 Tax=Pinus radiata RepID=O64402_PINRA	-	-	95%
FL-Next	tr=Endo-beta-1,4-glucanase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	97%
Sma3	Endo-beta-1,4-glucanase	-	-	-

Source	Gene names
Sma3	PrCel2;

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	0.0	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Six-hairpin glycosidase	IPR012341	-	-
Sma3	Glycoside hydrolase, family 9	IPR001701	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02290.1	AtGH9B13, GH9B13 glycosyl hydrolase 9B13 chr4:1002654-1005125 REVERSE LENGTH=516	70%
RefSeq	Arabidopsis thaliana	NP_192138.1	endoglucanase 17 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002301487.1	glycosyl hydrolase family 9 [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O64402

Fln msg:

Fln protein: MKVVWEACVAFSLAYVYILLWIGTATVEATPFHRIIPPLQSLYGRRGPSLSHDYRDALTKSILFYEGQRSGKLPLNQRMRWRADSALSDGAADHVDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGGRMGDNLDHAKAAIRWATDYLLKATARPGVIYVQVGDPNLDHKCWERPEDMDTSRNVYKIDADHPGSDVAAETAAALAAASMVFRTTDPIYSRHLLQTAMQVFDFADKHRGAYSDSLQSEVCPFYCSYSGYNDELLWGAAWLQRASRNLSYISYIQSHGQNLGAEDNVNIFSWDEKHAGARVLLAKEVLLRNSKSLEEYRGHADNFICSLLPGTPNSQAQYTPGGLLFKMSDCNLQYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSFA*

Protein Length: 517

Fln nts: TGACGAAATGCACCGGGAATGCGAAATCCATTGTTTTTTCCCTCTTTCTACCAGACGTTCGACTTCGACTTGACTGCTCAGTCGTGACGCCCTAAATTTCCACGATCGGCGCCACAGTTTCTCAACAGCCTTTGCCTTTGAGAGGGTGGCGCGTCCCCACCCTCTGTTAGAATATCGTGCGCTTGTGTTCCGAGATTCTCAATGTCGCCGCGCCACTGCGGCAAAAAAAGCAATTTAATTTGTTTGTCAATGGCAGCATTGGAATGCTCTGTCTTCTTTCCTTGATATGCGGATAGTTATGACCCACTCCACTGGCTTTTTCCTCCTTATTTTGCATGATAATATTCCTTCAACAGATGACTCGTGATATTGATCTTCATTGAAATTCTTATAAATCCCCACTCGTTCCCATTCCCGCTGCACACCCACCTAGCAGTTTGAGTTTGTGAGTTTTACTGTCATTTGAGCA_-_ATGAAGGTGGTGTGGGAAGCTTGCGTGGCGTTTTCGCTAGCTTATGTTTACATCTTATTATGGATAGGCACCGCAACGGTGGAAGCCACTCCCTTCCATAGAATTATACCTCCACTCCAATCCCTTTATGGCCGACGCGGCCCCTCTCTGTCTCATGACTATAGAGATGCTCTCACCAAATCCATTCTCTTCTACGAAGGTCAGAGATCTGGCAAACTCCCGCTCAACCAGCGAATGAGATGGAGGGCAGATTCTGCCCTTTCGGATGGAGCTGCAGACCACGTGGATCTGACGGGAGGATATTACGACGCAGGAGACAATGTGAAGTTTGGTTTCCCAATGGCTTTCACGACCACCATGTTGTCATGGAGCGTTTTGGAGTTCGGAGGGCGCATGGGGGATAACCTCGACCATGCAAAAGCCGCTATCCGTTGGGCTACAGATTACCTGCTTAAAGCCACTGCACGTCCCGGTGTTATATACGTGCAGGTAGGCGATCCAAACTTAGATCACAAGTGCTGGGAGAGGCCAGAGGACATGGACACATCTCGCAATGTGTATAAAATCGACGCTGATCATCCTGGATCCGACGTTGCCGCAGAAACTGCTGCAGCGCTGGCAGCGGCATCCATGGTGTTCAGAACAACGGATCCCATTTATTCTAGACACCTTCTGCAAACTGCAATGCAGGTATTTGATTTCGCTGACAAACACAGAGGCGCTTACAGTGACTCCCTCCAGTCGGAAGTTTGCCCATTTTATTGCTCATACTCGGGATATAATGACGAATTACTGTGGGGAGCAGCATGGTTGCAAAGAGCCTCAAGGAATTTATCATATATCTCCTACATTCAATCACATGGCCAGAATCTTGGCGCCGAGGATAACGTCAATATATTCAGCTGGGATGAGAAGCATGCAGGAGCGAGGGTTCTTTTGGCCAAGGAAGTTCTGCTAAGAAATTCCAAGTCCCTTGAGGAATACAGGGGCCACGCTGACAACTTCATTTGCTCTCTCTTGCCCGGAACACCAAATTCTCAGGCGCAGTACACACCAGGCGGACTACTTTTCAAAATGAGTGACTGTAATTTGCAATATGTGACGTCCACAACTTTCCTGCTTTTCACTTATGCAAAATACTTGAGAGTTTCCAAGCAAGTGGTGAGATGCGGGAACATGGTAGTCACTCCAACCAGAATACGTACACTTGCAAAAAGACAGGTGGACTACATACTGGGAGACAACCCACTCGGAATGTCATACATGGTGGGCTACGGTGCCAAGTTTCCAGAGCGCATACATCACAGGGGCTCATCTTTGCCTTCGATTTATCAGCATCCCCAAATCATTCCCTGCAACGATGGCTTCCAGTCGTTGTATAGCAACGCTCCCAACCCAAACAGACTCGTTGGCGCTGTCGTGGGAGGCCCCGACAACAATGACCATTTCTCCGATGAGCGCAATGACTATGCTCACTCTGAACCCACCACTTACATCAATGCTCCTTTGGTTGGATCCCTTGCTTATTTGGCACACAGTTTCGCTTAG___CATCTGCTTTCTTCCCTTTTCTGTTCTTTAAACTAACTGTTTTCCTGCCCTCCAGTTGTCTTAGTCGTCGTTTTCAATATGCTGTCATCCCTCATTTCTTTCTCTATCAGTTTTTCCTTTGTTTTGCTTCGTTTCAGAGGATGGGGATGATGCTTTATGTCTGTATATTATTCTGCAGCGGATGTCAATTAGCAGCACATGACGAAGTCAGTCAGTTCAAATAGGAAGTCTTTTCTTGAGTGAGTATCGTAGAGTGTGGGAAGCCGTGGGCTACTCTCATCTCACCTTTCATGTCTGCCAAATTTCAATGAAATATGTATAAATTAAATTATGTGTACATGGCGGCACATGGCATTATTACATCACATAAATTTTATTGTTCAATCATGAAAATGGTTTCAGTTGAAAAAAAATCATTGATGGCCATGATCCTCATCAGTGACTTCATTTAGTGGAGAGAAGGGGCCCGGCTTCACCATCTTCCACATTCCACATGCCATGATGCTATTATCTCCAAATACTCAGCTCAAACCTATGAATAGAATAATGAAATGGCTCTACTCATTCATAC

Fln Alignment:

Contig15870___MKVVWEACVAFSLAYVYILLWIGTATVEATPFHRIIPPLQSLYGRRGPSLSHDYRDALTKSILFYEGQRSGKLPLNQRMRWRADSALSDGAADHVDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGGRMGDNLDHAKAAIRWATDYLLKATARPGVIYVQVGDPNLDHKCWERPEDMDTSRNVYKIDADHPGSDVXXXXXXXXXXXSMVFRTTDPIYSRHLLQTAMQVFDFADKHRGAYSDSLQSEVCPFYCSYSGYNDELLWGAAWLQRASRNLSYISYIQSHGQNLGAEDNVNIFSWDEKHAGARVLLAKEVLLRNSKSLEEYRGHADNFICSLLPGTPNSQAQYTPGGLLFKMSDCNLQYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVG
O64402_______________MKVVSEACVAFSLAYVYVLLLIGTATVEATPFHRIIPPLQSLYGRRGPSLSHDYRDALTKSILFYEGQRSGKLPLNQRMRWRGDSALSDGAAGHVDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGGRMGDNLDHAKAAIRWATDYLLKATARPGVIYVQVGDPNLDHKCWERPEDMDTSRNVYKIDADHPGSDVAAETAAALAAASMVFRTTDPIYSRHLLQTAMQVFDFADKHRGAYSDSLQSEVCPFYCSYSGYNDELLWGAAWLQRASRNVSYISYIQSHGQNLGGEDNVNIFSWDDKHAGARVLLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTTFLLFTYPKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLRMSYMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
437	12			87	0.992554
2321		2		97	0.972772
2325	97		2		0.972772
2345	68			30	1.0
2353		4		95	1.0
2389	11			88	0.923564
2401	75		25		1.0
2406		16	83		0.994512
2416			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain