SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15866

Length: 683 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15866

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase, putative	-	-	4.0e-29	53%
FL-Next	sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Sma3	ATP-dependent RNA helicase, putative	-	-	5.366e-13	-

Source	Gene names
Sma3	At1g32490; At1g58050; At2g01130; At2g35920; B0308C03.3; CHLREDRAFT_120088; CHLREDRAFT_121004; CHLREDRAFT_122089; Dhx57; F11I4_16; GSVIVT00003541001; GSVIVT00009138001; GSVIVT00017756001; GSVIVT00030427001; GSVIVT00030750001; GSVIVT00035061001; GSVIVT00035

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	chalcone isomerase activity	GO:0045430	Molecular Function	-
Sma3	RNA splicing	GO:0008380	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	posttranscriptional gene silencing by RNA	GO:0035194	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Chalcone isomerase, subgroup	IPR003466	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	RWD domain	IPR006575	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	RNA helicase, ATP-dependent DEAH box, HrpB-type	IPR010225	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	RNA helicase, ATP-dependent, HrpB type, C-terminal	IPR013689	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G48650.2	DEA(D/H)-box RNA helicase family protein chr1:17989517-17995169 REVERSE LENGTH=1206	9.0e-33	63%
RefSeq	Arabidopsis thaliana	NP_175298.2	DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]	1.0e-32	63%
RefSeq	Populus trichocarpa	XP_002321501.1	predicted protein [Populus trichocarpa]	2.0e-32	62%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
230		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain