SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15865

Length: 1866 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15865

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Tubulin, beta chain	-	-	-

Source	Gene names
Sma3	TUB7; POPTRDRAFT_708103;

Source	InterPros	Term	Type	Identity
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G62700.1	TUB3 tubulin beta chain 3 chr5:25184501-25186426 FORWARD LENGTH=450	95%
RefSeq	Arabidopsis thaliana	NP_568960.1	tubulin beta-2/beta-3 chain [Arabidopsis thaliana]	95%
RefSeq	Populus trichocarpa	XP_002299042.1	tubulin, beta chain [Populus trichocarpa]	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT51

Fln msg:

Fln protein: MREILHIQGGQCGNQIGAKFWEVICDEHGIDTTGSYCGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISATMSGCTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQVYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEAEYEEEEAV*

Protein Length: 444

Fln nts: GCCTATGGGTGGAGGCCACAGCCGTTGAGATTTCGACAGAATTTGGATTTTTTTCTCTGGCTGTTTGAGGAGA_-_ATGAGAGAGATATTGCACATCCAGGGCGGGCAGTGCGGGAACCAGATAGGAGCCAAGTTCTGGGAAGTGATATGTGACGAGCATGGGATTGATACCACGGGCTCGTACTGTGGGGACTCCGATCTGCAGCTGGAGAGGATCAATGTCTATTACAACGAGGCCAGCGGCGGCCGCTATGTGCCTCGGGCAGTGCTGATGGATCTCGAACCTGGGACCATGGACAGCGTTCGATCAGGTCCCTATGGTCAGATCTTCAGGCCAGATAACTTCGTCTTTGGGCAGACAGGCGCCGGGAACAACTGGGCCAAAGGGCATTATACTGAGGGGGCAGAACTCATTGACTCCGTTCTTGATGTCGTGCGTAAGGAGGCCGAGAGCTGCGATTGTCTTCAGGGATTTCAAGTATGTCATTCCCTGGGAGGAGGAACAGGATCGGGAATGGGGACTCTCTTGATTTCCAAAATAAGGGAGGAGTACCCGGACAGAATGATGTTAACTTTCTCTGTTTTTCCATCACCTAAGGTATCGGACACAGTGGTGGAGCCTTATAATGCAACTCTTTCTGTACATCAATTGGTGGAGAATGCAGATGAATGCATGGTTCTTGACAATGAAGCACTTTACGACATTTGCTTCAGAACCTTGAAGTTAACAACGCCCACATTTGGAGATCTTAACCATTTAATATCTGCAACAATGAGTGGATGTACATGCTGCTTGCGGTTCCCTGGACAGTTAAACTCTGATTTGCGTAAACTTGCAGTTAACCTGATTCCATTCCCTCGCTTACACTTCTTTATGGTGGGATTTGCTCCCTTGACATCTAGAGGATCCCAAGTATACCGCTCCCTCACTGTGCCTGAACTTACACAGCAAATGTGGGATGCCAAGAACATGATGTGTGCAGCTGACCCTCGACATGGGCGTTACCTGACAGCCTCTGCTATGTTCCGTGGACGTATGAGCACAAAAGAAGTAGATGAACAAATGTTGAATGTTCAAAACAAAAATTCCTCTTATTTTGTGGAGTGGATACCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCAAAAGGTCTTAAGATGGCATCCACCTTCATTGGAAACTCTACTTCAATTCAAGAAATGTTCAGGCGAGTCAGCGAACAATTCACTGCCATGTTTAGGAGAAAAGCATTTTTGCACTGGTACACTGGTGAGGGCATGGATGAGATGGAATTCACAGAGGCAGAGAGTAACATGAATGATTTGGTGTCAGAGTACCAGCAGTATCAAGATGCAACTGCTGATGATGAGGCCGAGTACGAAGAAGAAGAGGCAGTTTAA___ACCTTGTTTTTTAGTTTATAAAGAGCCGAATCTGGAGCTTACCTAGTTAGTCCTTCTTGGAAATGGCTCATTCAGCATATCACTTCATAATGATTGAAAGTTGGTCTGTGCCAGATGTCATGGCTTTGGTTGAATTGAGGCCTAGAAGATGCTGTGTTTAGAATGAGTGGTTGGATTTTGTTTCGTTATTCACAATCTTAAAATTGTATGTGTTGCGTTATGTAATGTGTTTGAGTCTAGTTTGTTGCCCTCCTATAATTAAATAGTGGCTGTTCTGTTTAGTGCCTGATTTTCGTGATGTATTCTCTTATCAATGTAAAATGCCATATATATTTTCATTCTTCCTGGGGTTGAGAATGGAATAATGATAAAGAGTGTCAGGAATTAATAATTTTAATTGACTTGGTTGTGTAAATCTGGATGAATGCTACTGTTGTATACAAAAATTAAATGGTAGAATGATG

Fln Alignment:

Contig15865___MREILHIQGGQCGNQIGAKFWEVICDEHGIDTTGSYCGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISATMSGCTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQVYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
C0PT51_______________MREILHIQAGQCGNQIGAKFWEVICDEHGIDPTGRYSGDGDLQLERINVYYNEANGGRYVPRAVLVDLEPGTMDSVRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSILDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLISRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1316		80		20	0.995493
1520			78	21	1.0
1521			21	78	1.0
1676		28		71	1.0
1768	88		11		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain