SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15834

Length: 1267 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15834

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial glycoprotein family protein [Arabidopsis thaliana] emb\|CAB82978.1\| putative protein [Arabidopsis thaliana] gb\|AAP88362.1\| At5g02050 [Arabidopsis thaliana] dbj\|BAE99935.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED90426.1\| Mitochondri	-	-	1.0e-32	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial glycoprotein	IPR003428	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZK2

Fln msg:

Fln protein: MSLFYVVRRAASSVAPKAFRALKHQRFIVSATGSAFQSCCRKETIKGTPWVSSRAATSIAACAKSNKNLVEMLEEEIQCALESDPPTEDPKPPGTIPWEIEDILGNQAVILRKKHGNEDIKVEVMPGDMGDEEEEDDEEDRDSDIASVEPHVYLTVTISKGEGPFLEFICTGYAKEVSIDAMAFKHPQKKASYEGDRIPYDGPDFNDLDESLQKALQKYLEVRGIKPVLTNYLSEYVINKERKENINWLKTVKEYIEK*

Protein Length: 260

Fln nts: ATGGGGGCTTAAAACGCAAATTTCTAGAGCAGGGCTATAAAAGGCTACAGATGCTTAAACCCTACACAGGGTTTTAGTTCCGGAGATATTTGTGTTTGTA_-_ATGTCTCTGTTTTATGTTGTCCGCAGGGCAGCCTCCTCTGTAGCACCAAAGGCTTTCAGAGCCTTAAAGCATCAGAGGTTCATCGTTTCGGCCACTGGGTCTGCATTTCAAAGCTGTTGCAGGAAAGAAACAATCAAGGGAACACCATGGGTTTCCAGTCGCGCGGCTACTTCAATTGCCGCCTGTGCGAAATCGAATAAAAACCTAGTGGAAATGCTTGAAGAGGAGATTCAGTGTGCGCTTGAATCGGACCCTCCCACCGAGGATCCTAAACCCCCGGGCACCATTCCCTGGGAGATCGAAGACATACTGGGCAATCAGGCGGTTATTTTGCGGAAGAAACATGGTAATGAGGATATAAAAGTTGAAGTTATGCCAGGGGACATGGGTGACGAGGAAGAGGAGGACGACGAAGAAGATAGGGACAGTGATATCGCTTCTGTTGAACCCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTCGAGTTTATTTGCACTGGGTATGCCAAAGAGGTTTCAATCGATGCCATGGCCTTCAAACATCCACAGAAAAAGGCATCATATGAAGGAGATCGAATTCCGTACGATGGACCTGACTTCAACGATTTGGATGAGAGTTTACAGAAGGCCCTTCAAAAATACCTGGAAGTTCGAGGCATCAAGCCCGTTCTAACAAATTACCTGAGCGAATATGTGATAAACAAGGAGCGTAAGGAAAATATCAATTGGTTGAAAACTGTTAAGGAATATATTGAAAAGTAG___AACGTAATTGACATCTCTGTTTTGGTAACCTATTATGGTTCAGCCACAAGAAAGGATAATTGTGCATCAGTCAACAAAATTGACTGATCTTGGAGTGCAGAGGAGAATGGCAGAGGTCAGTTGCCTGCAACGGGGAAGAACACTAGTTTTTTTAGTGTTATCTTTTAATGTACTCTTCTAGACAACTCTCTAGTGCTCTGTTATAATGTTATTGCTGAGGTGGTCATTTAAAAAAATGTTATATGGGGAATGGTAGCCTACTTTGAATGTTATTTGTCACGGATGAATGTATTTTTGTGTTAGAACATATAATTGAGTAAGCACTTTGTTTTGTATCCTTTAAACTTTTTTGGTTTGCATAAAACTTTATTTTATGTGCGTGCATTCATG

Fln Alignment:

Contig15834___MSLFYVVRRAASSVAPKAFRALKHQRFIVSATGSAFQSCCRKETIKGTPWVSSRAATSIAACAKSNKNLVEMLEEEIQCALESDPPTEDPKPPGTIPWEIEDILGNQAVILRKKHGNEDIKVEVMPGDMGXXXXXXXXXXXXXXIASVEPHVYLTVTISKGEGPFLEFICTGYAKEVSIDAMAFKHPQKKASYEGDRIPYDGPDFNDLDESLQKALQKYLEVRGIKPVLTNYLSEYVINKERKENINWLKTVKEYIEK
A9NZK2_______________MSLFYAVRRAASSVAPEAFRALKHHRFIHSAIGSAFQNRCRKEIIKGTPWVSSRKATSIAVYTKSNGNLLELLEDEIQCALESDPPTEDAKLPGTIDWEIEDILGNQAVMLRKKYGNEDIQVEVVPGDM--DDDDDEEEDGDSNIASVEPHVYLTVTICKGEGPFVEFICTGYDKEVSIDAMAFKHPYKNTSDEGDRIPYDGPDFNDLDENLQKAFHKYLEVRGIKPGLANYLSEYMINKERKEYINWLKTVKEYIEK

SNPs (tot: 4)

Position	A %	C %	T %	Probability
1070		20	80	0.999996
1121		33	66	1.0
1170	80		20	0.995493
1171	20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain