SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15810

Length: 1925 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15810

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectate lyase n=1 Tax=Dianthus caryophyllus RepID=D4QD73_DIACA	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Sma3	Pectate lyase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectate lyase.	EC:4.2.2.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		0.0	%

Source	Gene names
Sma3	9612; AT3G01270; AT59; At1g04680; At1g11920; At1g14420; At1g30350; At1g67750; At2g02720; At3g01270; At3g07010; At3g24230; At3g24670; At3g27400; At3g53190; At3g54920; At4g13210; At4g13710; At4g22080; At4g22090; At4g24780; At5g09280; At5g15110; At5g48900; A

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	pectate lyase activity	GO:0030570	Molecular Function	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	defense response, incompatible interaction	GO:0009814	Biological Process	-
Sma3	cell wall modification involved in multidimensional cell growth	GO:0042547	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF11	IPR001434	-	-
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectate lyase, N-terminal	IPR007524	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67750.1	Pectate lyase family protein chr1:25401660-25403165 FORWARD LENGTH=408	76%
RefSeq	Arabidopsis thaliana	NP_564906.1	putative pectate lyase 5 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002322215.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK6

Fln msg:

Fln protein: MTGYRCVFSLLSFLGMFCARSSAGKSFENFTAAIHGQAAVVSGSKDTQQSATKYVEQPGRVVEAVERSINNSRRELSYLTCGTGNPIDDCWRCNPDWENNRKRLADCAIGFGGNATGGRNGRIYVVTDSNDYDAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELFMNSYKTIDGRGANVHIANGACITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTRSDGDGVSIVGGSNIWIDHCSLSNCADGLIDAVLGSTAITISNNFMTHHDKVMLLGHSDEYMQDVNMQVTVAFNRFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFHAPVNPFSKEVTKHEDALESVWRQWNWRSNGDLMLNGAFFTQSGAAASSSYAKASSLAAKPSSLVGSLTGNSGVLVCRKGSRC*

Protein Length: 435

Fln nts: GGGAAAGGTGTTTGTGGAGATTCGTGCACACCAGCCGAGTTTTAGCACAAGTTTCGTGGTCATGTTATGTGTGCTCGACTGACATTAGTTGTAATTTATAGGAATTAGCCTAGCAGCTTGTTATCTATGATTTACCATATTCTCGTAAATCAATGTCATAAGCTCAACAGAGTCTTCTCTTGCCCATTGTGTTGTTAGCAGAATCGATTCAGCAGAGAATATCTAGCATAGCAGCCAAGTATTATATATAGGAGTGTAGTGGAATCCCATCGTTGTAGTCTGCAGACTGTAATATTGTTGGCCCTCTTCTGTAACCAAA_-_ATGACTGGCTATCGATGTGTGTTCTCATTGCTTAGTTTCTTGGGAATGTTTTGCGCTCGTTCTTCAGCAGGCAAGTCATTCGAGAATTTTACAGCGGCTATCCATGGTCAGGCTGCGGTCGTATCTGGTTCTAAAGATACTCAACAATCTGCAACGAAATATGTGGAGCAGCCCGGACGGGTAGTTGAAGCTGTTGAAAGGAGTATTAACAATTCGAGGAGGGAGCTAAGTTATTTGACTTGCGGAACGGGGAATCCCATCGACGATTGCTGGCGCTGCAATCCAGACTGGGAAAACAATCGAAAGAGGCTTGCAGACTGCGCCATTGGGTTTGGCGGGAATGCCACTGGAGGGAGGAATGGGAGGATTTATGTTGTCACAGATTCCAATGACTACGATGCAGTCAATCCACGGCCGGGTACGCTGCGCCATGCTGTGATTCAAACTGAGCCTCTGTGGATAATTTTTCAGAGAGACATGGTCATCCAGCTCAAAGAAGAGCTTTTCATGAACAGTTACAAGACAATAGACGGAAGAGGTGCAAATGTCCACATTGCCAACGGTGCCTGCATTACGGTACAGTACGTCCACCACATTATCATTCACGGGATTCACATCCATGACTGCAAGCCTGCAGGAAATGCCATGGTAAGGGATTCCCCGGGACATTACGGGTGGAGAACGAGAAGTGATGGAGATGGAGTCTCCATCGTTGGGGGAAGCAATATCTGGATAGACCATTGCTCCTTGTCAAATTGTGCAGATGGACTCATAGATGCCGTCCTGGGGTCGACTGCAATAACAATTTCAAACAATTTTATGACACACCATGATAAGGTCATGCTCCTCGGTCACAGTGACGAGTATATGCAGGATGTTAACATGCAAGTAACAGTTGCTTTCAACCGTTTCGGGGAAGGGCTTGTGCAACGCATACCTAGATGCCGACATGGCTACTTCCACGTGGTGAACAACGATTACACACACTGGGAAATGTACGCAATTGGTGGAAGTGCAAACCCAACAATCAACAGCCAAGGCAATCGATTCCACGCACCGGTCAATCCCTTCTCCAAGGAGGTGACGAAACACGAGGACGCACTGGAAAGTGTATGGAGACAATGGAATTGGAGGTCAAACGGAGACCTAATGTTGAATGGGGCGTTTTTTACTCAGTCTGGCGCGGCCGCATCATCAAGCTATGCGAAGGCTTCGAGTCTCGCAGCGAAGCCATCGTCTCTTGTAGGGTCCCTCACAGGGAACTCTGGTGTTCTGGTATGCCGAAAAGGCTCCCGCTGTTAA___TCCCAACAACAGTTGGACGCACACACCCACTCTCAATGTCCCTGTCTGTCCCAATTAGCTTTTCGGTAGCAACTTCTCTTTCGGTATAGTATATATAGTGAGCACTCTTTCATGTGAGAGCATGTTAAATAACTTGACGAAGCTCTTCCACTTTTCAAACTTGGACCTCCACGAATATACCGCTCTCCTCCTTTATGTATGCAGTTAGTGTGCAAGCGTAGATGTGTTCCAGAATGTCGATTGCATAAATACTGTGTATGTACAGTCATTTATATAAGTTATCGATTCTATTTCTGTGTTCATT

Fln Alignment:

Contig15810___MTGYRCVFSLLSFLGMFCARSSAGKSF---ENFTAAIHGQAAVVSGSKDTQQSATKYVEQPGRVVEAVERSINNSRRELSYLTCGTGNPIDDCWRCNPDWENNRKRLADCXXXXXXXXXXXXXXXXYVVTDSNDYDAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELFMNSYKTIDGRGANVHIANGACITVQYVXXXXXXXXXXXDCKPAGNAMVRDSPGHYGWRTRXXXXXXXXXXXXNIWIDHCSLSNCADGLIDAVLGSTAITISNNFMTHHDKVMLLGHSDEYMQDVNMQVTVAFNRFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFHAPVNPFSKEVTKHEDALESVWRQWNWRSNGDLMLNGAFFTQSGXXXXXXXXXXXXXXXXXXXXVGSLTGNSGVLVCRKGSRC
A9NWK6_______________MSGYRTVLALLVLLWIFCIPSEASKTFGILEKLTGAALGRPAVVPETKHAQEPATKHVEDPERVVEMVERSINSSRRELSYLSCGTGNPIDDCWRCDSDWENNRKRLADCAIGFGRNAIGGQNGRIYVVTDPNDYNAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTVSDGDGVSIFGGSNIWVDHCSLSNCADGLVDAIRGSTAITVSNNYMSHHNKVMLLGHSDDYTQDVNMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPTNPFSKEVTKHEDAPESKWRQWNWRSDGDQMLNGAFFTPSGAGASSSYSKASSLAARPSSLVPSLTTNAGVLTCRSGSRC

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
249	83	16			0.999991
283	16		83		0.999991
294		41		58	1.0
326		33		66	1.0
342	10			90	0.90298
344		88	11		0.923564
360		42		57	1.0
369		14		85	0.993533
428		20		80	0.995493
476	75			25	0.996473
1354	80		20		0.995493
1363	80			20	0.995493
1639		95		4	0.994598
1653	92			7	1.0
1703	96		3		0.984346
1733	97		2		0.972772
1781		93		6	1.0
1789	94	5			1.0
1926		63	36		1.0
1934	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain