SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15726

Length: 973 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene15726 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nonsense-mediated decay UPF3 [Medicago truncatula]	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%
Sma3	Chromosome undetermined scaffold_92, whole genome shotgun sequence	-	-	3.202e-06	-

Source	Gene names
Sma3	At1g33980; F12G12.20; GSVIVT00035287001; GSVIVT00038330001; GSVIVT00038335001; H0525C06.10; MtrDRAFT_AC140549g44v2; OJ000114_01.14; Os04g0440100; OsI_16007; OsJ_14914; PHYPADRAFT_170493; POPTRDRAFT_672843; POPTRDRAFT_780566; POPTRDRAFT_827452; RCOM_075830

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of nonsense-mediated decay, UPF3	IPR005120	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G33980.2	ATUPF3, UPF3 Smg-4/UPF3 family protein chr1:12351719-12354401 FORWARD LENGTH=484	60%
RefSeq	Arabidopsis thaliana	NP_174660.2	Smg-4/UPF3-like protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002328787.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7TGS2

Fln msg: Distance to subject end: 232 aas, your sequence is shorter than subject: 287 - 519

Fln protein: MKDPGDRTKVVLRHLPPTLSQAALKDQIDARFAGRYNWFSFRVGRASHLNQPYSRAYIEFKRAEDVIDFAGAFDGHLFLNEKGTHFKTIVEYAPSQRVPKSWIKKDTREGAIFKDNEYLEFLDLLAKPVENLPSAEVQLERREAERAAGGTRDNLIVTPLMDYVRQKRAAKSGSQRSASSGKLGRRAGGASTATSSAVGHRRGPERRRTATATYVLRDNTRIASNKDKSTYILSPRREDKQHIDSDMSIQVVSRVEELEDGAGAAGKTTVSTVKGTVTGTEGSGEVG

Protein Length: 288

Fln nts: TGGAAACATTGTATTGAATGGTGGCGCGTTCGAATCCCATAAGTTGAAGAAGCGCAACAACAAGAATTCTCGCGTCAATTTCATCGGGCGCAGATCATCGCGGGGGTCAC_-_ATGAAGGATCCGGGAGATCGCACCAAGGTGGTGCTGCGGCATCTGCCGCCCACGCTCTCGCAGGCTGCTTTGAAGGACCAGATTGATGCCCGCTTTGCTGGGCGCTACAACTGGTTTTCTTTTCGCGTCGGGAGGGCCAGCCACTTGAATCAACCATACTCTCGGGCCTATATTGAATTTAAGAGAGCAGAAGACGTGATTGATTTTGCTGGAGCTTTTGATGGCCATCTCTTTCTTAATGAAAAAGGTACACATTTCAAGACTATTGTGGAATATGCACCTTCACAGCGAGTCCCTAAATCATGGATCAAAAAGGATACGCGAGAAGGAGCAATCTTCAAAGACAATGAGTATTTGGAGTTCTTAGATTTGCTGGCAAAACCTGTTGAGAATCTTCCTAGTGCAGAGGTACAATTGGAGAGAAGGGAGGCTGAAAGAGCAGCAGGTGGAACAAGAGACAATCTCATAGTCACCCCATTGATGGATTATGTCAGGCAAAAACGGGCTGCCAAGAGTGGATCCCAGCGATCAGCTTCAAGCGGAAAATTGGGGAGAAGGGCTGGAGGGGCCTCTACAGCTACTTCAAGTGCAGTGGGTCATAGGAGAGGTCCTGAAAGGAGGCGAACAGCAACTGCTACTTATGTGTTGAGGGATAATACAAGGATTGCAAGCAACAAAGATAAATCTACATATATTCTATCTCCACGGAGGGAAGATAAACAACACATTGACAGTGATATGTCAATACAAGTTGTTTCCAGGGTAGAGGAACTTGAAGATGGTGCTGGTGCAGCTGGGAAAACTACAGTGTCTACAGTCAAGGGGACAGTAACTGGTACTGAAGGATCTGGTGAAGTTGGGAA

Fln Alignment:

Contig15726___MKDPGDRTKVVLRHLPPTLSQAALKDQIDARFAGRYNWFSFRVGRASHLNQPYSRAYIEFKRAEDVIDFAGAFDGHLFLNEKGTHFKTIVEYAPSQRVPKSWIKKDTREGAIFKDNEYLEFLDLLAKPVENLPSAEVQLXXXXXXXXAGGTRDNLIVTPLMDYVRQKRAAKSGSQRSASSGKLXXXXXXXXXXXXXAVGHRRGPERRRTATATYVLRDNTRIASNKDKSTYILSPRREDKQHIDSDMSIQVVSRVEELEDGAGAA
D7TGS2_______________MKGPLDRTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNSQKRQSYSRAYLDFKRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDPEYMEFVELLAKPVENLPSAEIQL-ERREAERAGAVKDTPIVTPLMDFVRQKRAAKGVSRRSLSNGKLSRRASGSSSGNPSLGSSKRGSEKRRLSTTMYVLRDTAKSTSAKDKSTFILVPKRDDQLLSDKSVNLAAGGGAEALEEESGVS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
174	20			80	0.995493
178			80	20	0.995493
892		76		23	1.0
940		11	88		0.923564
941		11	88		0.923564
942		11	88		0.923564
951		12	87		0.992554
955		75	25		0.996473
956	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain