SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15689

Length: 1100 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene15689 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DEF/GLO-like protein n=1 Tax=Pinus radiata RepID=Q9M7M7_PINRA	-	-	79%
FL-Next	tr=DEF/GLO-like protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	93%
Sma3	DEF/GLO-like protein	-	-	-

Source	Gene names
Sma3	PrDGL;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G20240.1	PI K-box region and MADS-box transcription factor family protein chr5:6829203-6831208 FORWARD LENGTH=208	7.0e-36	50%
RefSeq	Arabidopsis thaliana	NP_197524.1	Floral homeotic protein PISTILLATA [Arabidopsis thaliana]	8.0e-36	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9M7M7

Fln msg:

Fln protein: MGRGKIEIKMIENATNRQVTFSKRRGGLKKKAQELSVLCNAEVALIIFSSTGKLHEWSSSSMKKILERYQKSEQGLGLMDYQHQQLLCEMRRITKENETLQERLRHMNGEEVNSLKLPELFKLEEQLDKAATQVRRRKDHVLENERIKRRNKMRRMEEENIILHGMLEQNQGHMEEDNGQFNFVLYQPLKKMRTAFPAPLLRLQPNQPNLQDIGY*

Protein Length: 217

Fln nts: ATGGGGAATGACTTTTCTTATATATAGTCACGTAGCGTTTGTATCTGGGTCTTGGGTGCGCGGTTAAGAAAGTTTAACAGAAACGTTGCAAGCTGCTTGTTTAGTTTCTTTGCTTCAAGGGAAAAGAAAGGAAGAGATTCCCAGAGGACAAGATCGAGATAA_-_ATGGGGAGGGGGAAGATTGAAATAAAAATGATTGAGAATGCAACAAACAGGCAAGTCACCTTCTCTAAGAGAAGAGGGGGGCTTAAAAAGAAAGCTCAGGAGCTCTCCGTCTTATGCAATGCAGAAGTTGCTCTCATCATTTTTTCCAGCACTGGCAAACTCCATGAGTGGTCAAGCTCGAGCATGAAGAAAATTCTCGAGAGATACCAGAAATCGGAGCAGGGACTAGGACTCATGGATTATCAACATCAACAGCTGTTGTGTGAAATGAGACGAATCACCAAAGAAAATGAAACCCTTCAAGAGCGTTTAAGGCATATGAATGGCGAGGAAGTCAATTCGTTGAAGCTCCCAGAGCTCTTCAAACTCGAAGAGCAGCTTGACAAGGCAGCAACTCAAGTCCGAAGAAGAAAGGATCATGTTTTAGAAAATGAAAGAATCAAGCGAAGGAACAAGATGCGTCGTATGGAGGAAGAGAACATAATTCTTCACGGAATGCTTGAGCAGAATCAGGGACACATGGAAGAGGATAACGGTCAGTTTAATTTTGTACTTTACCAACCACTGAAGAAAATGCGGACTGCGTTCCCTGCACCACTGCTCCGTCTACAGCCAAATCAACCGAACTTGCAGGATATTGGATATTAA___CTAAGTCGATGTGCATCACTAGTTATAAGTTTGATGGACATCTAAGTTGTAGTGGTAGTTTTGGAGATCCAAACCTTATGAAAGATGATTGCAAATAATTATTTCAAAGTTATGAATATCACATTCCAGATTTAGCTATGTAAATGGTCATGGCGGCATTGTATGTTTTATAAAATTATTTGGAGACCCTTTTTTAGAGATGTCTGAAATAGTTTCGGAGATCCAAAGCTTATGAAAGATGACTGCAAATAATTATTTCAAAGTTATGAATATCACATTCCAGATTTAGC

Fln Alignment:

Contig15689___MGRGKIEIKMIENATNRQVTFSKRRGGLKKKAQELSVLCNAEVALIIFSSTGKLHEWSSSS--------MKKILERYQKSEQGLGLMDYQHQQLLCEMRRITKENETLQERLRHMNGEEVNSLKLPELFKLEEQLDKAATQVRRRKDHVLXXXXXXXXXXXXXXXXXXIILHGMLEQNQGHMEEDNGQFNFVLYQPLKKMRTAFXXXXXXXXXXXXXXQDIGY
Q9M7M7_______________MGRGKIEIKMIENATNRQVTFSKRRGGLKKKAQELSVLCNAEVALIIFSSTGKLHEWSSSSSFFMLQKSMKKILERYQKSEQGLGLMDYQHQQLLCEMRRITKENESLQERLRHMNGEEVNSLKLPELFKLEEQLDKAATQVRRRKDHVLENERIKQRNKMRRMEEENIILHGM---NQGHMEEDNGQFNFVLYQPVKKMRTAFPAPLLRLQPNQPNLQDIGY

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1050	11	64	23		1.0
1051		70	5	23	1.0
1052		88	11		0.999952
1054	70	5	17	5	1.0
1055	23	5	5	58	1.0
1058	25		75		0.996473
1060	75	25			0.996473
1061	25		75		0.996473
1062	75	25			0.996473
1063		75		25	0.996473
1064			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain