SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15608

Length: 1222 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15608

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RLX9_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDSL	IPR001087	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G74460.1	GDSL-like Lipase/Acylhydrolase superfamily protein chr1:27988150-27989765 REVERSE LENGTH=366	54%
RefSeq	Arabidopsis thaliana	NP_177586.1	GDSL esterase/lipase [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002318602.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXM8

Fln msg:

Fln protein: MGNRATAAVEHFVYKGTMERIGIEELSACFMAIMMVTTLYVGASAAETEIKPVSFIFGDSLSDVGNNNHLQRSLAKSNYPWYGIDFGNGLPTGRYTNGRTICDIVAEKTGLPIPAPILSPSTDENVVLKQGANYASGGGGILNETGSLFIQRLWLWKQIEMFQGTKMIIANKIGQEKAEKFFNESIYLMSIGSNDYINNYLLPVQADSWQFAPDDFINYLISTLRQQLTTLHQLGVRKLLFTGLGPLGCIPLQRVLTTDGSCQQNLNEYAVKFNAATGNLIADLNSKLPGARFVFADGYTFFTKLIENPQAYGFENGDTPCCSFGRYRPTLSCVAAAKLCPDRTKYLFWDEYHPSDAANLIIAQSLISAIKRNHGNSAHSPSLSPSPSPSAF*

Protein Length: 394

Fln nts: GGCGC_-_ATGGGAAACAGAGCAACAGCTGCAGTAGAGCACTTTGTGTATAAGGGAACAATGGAGCGAATTGGGATCGAGGAACTAAGTGCATGTTTCATGGCAATTATGATGGTGACGACGTTATACGTTGGCGCAAGCGCAGCAGAAACAGAGATAAAGCCTGTATCCTTTATTTTTGGAGACTCTTTGTCAGATGTTGGAAACAACAATCACCTGCAGAGGAGTCTAGCGAAGTCCAATTATCCATGGTATGGAATTGACTTTGGTAACGGATTGCCCACAGGAAGATACACCAATGGCCGAACCATTTGTGATATAGTTGCTGAGAAAACAGGTTTGCCAATCCCGGCGCCGATCCTGTCTCCATCCACAGATGAGAACGTCGTGTTGAAACAAGGTGCCAACTATGCTTCGGGTGGAGGCGGCATTCTTAACGAAACAGGATCTCTTTTTATTCAACGACTGTGGCTGTGGAAGCAAATAGAGATGTTTCAAGGCACCAAGATGATCATTGCCAATAAAATCGGGCAAGAAAAAGCGGAGAAATTCTTTAATGAATCCATCTATTTAATGTCCATTGGAAGCAACGACTACATCAACAATTATTTGCTCCCCGTCCAGGCTGATTCCTGGCAATTTGCTCCCGATGATTTCATAAATTATCTTATTTCCACATTGCGCCAACAACTCACGACACTACATCAATTAGGCGTACGCAAGTTGCTCTTCACAGGATTGGGACCTCTGGGTTGCATTCCACTGCAGCGGGTACTGACAACAGATGGTAGTTGCCAACAGAATCTCAACGAGTATGCCGTCAAGTTTAATGCTGCCACTGGAAACCTCATCGCAGATCTAAATTCAAAACTGCCAGGAGCTCGCTTTGTCTTTGCCGATGGTTACACTTTCTTCACCAAACTTATAGAAAATCCCCAAGCTTATGGGTTCGAAAATGGTGATACTCCTTGCTGCAGTTTTGGAAGATACCGGCCCACATTAAGTTGCGTGGCTGCTGCAAAGCTGTGTCCAGACAGAACCAAATATTTGTTTTGGGATGAATACCATCCTAGTGATGCTGCCAATTTAATTATTGCACAGAGTCTGATTTCTGCTATTAAAAGGAATCATGGGAATTCTGCTCATTCACCATCTCTATCGCCATCTCCTTCTCCATCAGCATTTTGA___AAATAAATTTCTCTACATTTTCATTCTTGAGAGTAGAC

Fln Alignment:

Contig15608___MERIGIEELSACFMAIMMVTTLYVGASAAETEIKPVSFIFGDSLSDVGNNNHLQRSLAKSNYPWYGIDFGNGLPTGRYTNGRTICDIVAEKTGLPIPAPILSPSTDENVVLKQGANYASGGGGILNETGSLFIQRLWLWKQIEMFQGTKMIIANKIGQEKAEKFFNESIYLMSIGSNDYINNYLLPVQADSWQFAPDDFINYLISXXXXXXXXXXXXGVRKLLFTGLGPLGCIPLQRVLTTDGSCQQNLNEYAVKFNAATGNLIADLNSKLPGARFVFADGYTFFTKLIENPQAYGFENGDTPCCSFGRYRPTLSCVAAAKLCPDRTKYLFWDEYHPSDAANLIIAQSLISAIKRNHGNSAH
A9NXM8_______________MERIGIEALSTGFMAILMVVALYVGAGAAATEIKPVSFIFGDSLSDVGNNNHLPRSLAKSNYPWYGIDFGNGLPTGRYTNGRTICDIVAEKTGLPIPAAVLDPSTDDNTVLKRGLNYASGGAGILNETGYLFIQRLCLWKQIEMFRDTKMTIANKIGHDKAEKFINGSIYLMSIGSNDYINNYLLPVQADSWQYAPDDFINYLLSTLRHQLTTLHQLGVRKLVFTGLGPLGCIPLQRVLTSDGSCQQNLNEYAVKFNAATKNLVTDLSSKLPAASFVFADGYTFFTKLIENPQAYGFDNGDTPCCSFGRYRPTLSCVAAAKLCPDRTKYLFWDEYHPSDAANLMIAQGLVDALKHSTGSSPH

SNPs (tot: 97)

Position	A %	C %	G %	T %	Probability
7	33			66	0.997452
10		33	66		0.997452
11	33		66		0.997452
12	66	33			0.997452
14	66		33		0.997452
20	33	66			0.997452
21	66		33		0.997452
23		66	33		0.997452
25	33		66		0.997452
64	33	66			0.997452
86			66	33	0.997452
115	66		33		0.997452
116		66		33	0.997452
123	66			33	0.997452
139	33		66		0.997452
147	33		66		1.0
149		66	33		0.997452
167		66		33	0.997452
171		33		66	0.997452
177		33		66	0.997452
180	66		33		0.997452
183		66		33	0.997452
204		66		33	0.997452
218	66			33	0.997452
228	75		25		0.996473
235			25	75	0.996473
255	75			25	0.996473
333	66		33		0.997452
348	33		66		0.997452
361			33	66	0.997452
372	66		33		0.997452
414		33	66		0.997452
451		33		66	0.997452
454	66	33			0.997452
491	25		75		0.996473
512		75	25		0.996473
526		50		50	1.0
527		75		25	0.996473
619		25		75	0.996473
632	20	80			0.995493
651		16		83	0.994512
681	28		71		1.0
687	71		28		1.0
714		85		14	0.993533
720		71	28		1.0
732	16	83			0.994512
741		16		83	0.994512
754		50		50	1.0
819		75		25	0.996473
826			33	66	1.0
833	33		66		0.997452
890		16	83		0.994512
898	16	83			0.994512
920	83	16			0.994512
922	83	16			0.994512
960		14	85		0.993533
961		14		85	0.993533
967	28			71	1.0
991		85		14	0.993533
994	14		85		0.993533
1006		14		85	0.993533
1009		85		14	0.993533
1012		42	57		1.0
1027		14	85		0.993533
1072	12			87	0.992554
1091	85		14		0.993533
1093		14		85	0.993533
1096		14		85	0.993533
1099	85		14		0.993533
1108			85	14	0.993533
1114		14		85	0.993533
1115			85	14	0.993533
1117		14		85	0.993533
1118	85	14			0.993533
1124	85	14			0.993533
1125			57	42	1.0
1126			85	14	0.993533
1131	85	14			0.993533
1139		14		85	0.993533
1142	14		85		0.993533
1145	14	85			0.993533
1146	85	14			0.993533
1147	14			85	0.993533
1150	85		14		0.993533
1153	85			14	0.993533
1154			14	85	0.993533
1155		85		14	0.993533
1156			14	85	0.993533
1157		71	28		1.0
1158		42		57	1.0
1162			85	14	0.993533
1166		14		85	0.993533
1167		85		14	0.993533
1171	14			85	0.993533
1198		25		75	0.996473
1200		75	25		0.996473
1208		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain