SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15595

Length: 530 nt

UniGene Fasta

>sp_v3.0_unigene15595
AGCAAATGACTTTTGACGGTTGCGCTTTGGCTGAAACTTGTACAAGGAGAATGGCTGGGGGGGTTCTAAGTCACTTACTGAGGCAGCGTTGCTGTAAGAGGACTGGATTTTGATTACGGATAAGAGGAGGTCTGTGAATAAATGGCAGATCTATCTAGAAACGGTCCTATTGAACGGGATATTGAGCAGGCCATAACTGCACTGAAAAAGGGCGCATATTTACTGAAGTATGGAAGGCGAGGGAAGCCTAAGTTCTGTCCTTTCAGACTTTCTAACGATGAATCTGTCTTGATCTGGTATTCAGGTAAAGAGGAGAAGCACCTGAAACTAAGTCATGTATCAAGGATTGTACCAGGACAGCGTACTGCAATTTTCCAGAGGTATCCACGGCCTGAGAAGGAGTATCAGTCATTTTCACTGATATACAATGATAGATCACTCGACTTGATTTGTAAGGATAAAGATGAAGCAGAAGTTTGGTTTGTTGGGCTTAAAGCACTGATCTCACGCGGTCATCATATCAAATGGAA

Ace file of the UniGene sp_v3.0_unigene15595

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ran GTPase binding protein, putative n=3 Tax=rosids RepID=B9SM24_RICCO	-	-	0.0	89%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	89%
Sma3	Ran GTPase binding protein, putative	-	-	1.908e-22	-

Source	Gene names
Sma3	At1g65920; At1g69710; At1g76950; At3g47660; At5g12350; At5g19420; At5g42140; F12P19.9; F1P2.210; F22K20.5; F8D11.8; GSVIVT00000125001; GSVIVT00002263001; GSVIVT00020277001; GSVIVT00022255001; GSVIVT00023458001; GSVIVT00029144001; GSVIVT00030935001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	myosin complex	GO:0016459	Cellular Component	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Brevis radix-like domain	IPR013591	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G12350.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain chr5:3995789-4000545 FORWARD LENGTH=1075	87%
RefSeq	Arabidopsis thaliana	NP_197443.3	regulator of chromosome condensation-like protein with FYVE zinc finger domain [Arabidopsis thaliana]	89%
RefSeq	Populus trichocarpa	XP_002313993.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: B9HNF1

Fln msg: Distance to subject end: 967 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 129 - 1104

Fln protein: MADLSRNGPIERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWYSGKEEKHLKLSHVSRIVPGQRTAIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFVGLKALISRGHHIKW

Protein Length: 130

Fln nts: AGCAAATGACTTTTGACGGTTGCGCTTTGGCTGAAACTTGTACAAGGAGAATGGCTGGGGGGGTTCTAAGTCACTTACTGAGGCAGCGTTGCTGTAAGAGGACTGGATTTTGATTACGGATAAGAGGAGGTCTGTGAATAA_-_ATGGCAGATCTATCTAGAAACGGTCCTATTGAACGGGATATTGAGCAGGCCATAACTGCACTGAAAAAGGGCGCATATTTACTGAAGTATGGAAGGCGAGGGAAGCCTAAGTTCTGTCCTTTCAGACTTTCTAACGATGAATCTGTCTTGATCTGGTATTCAGGTAAAGAGGAGAAGCACCTGAAACTAAGTCATGTATCAAGGATTGTACCAGGACAGCGTACTGCAATTTTCCAGAGGTATCCACGGCCTGAGAAGGAGTATCAGTCATTTTCACTGATATACAATGATAGATCACTCGACTTGATTTGTAAGGATAAAGATGAAGCAGAAGTTTGGTTTGTTGGGCTTAAAGCACTGATCTCACGCGGTCATCATATCAAATGGAA

Fln Alignment:

Contig15595___ADLSRNGPIERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWYSGKEEKHLKLSHVSRIVPGQRTAIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFVGLKALISRGHHIKW
B9HNF1_______________SDLGRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLRLSHVSKIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHQKW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain