SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15561

Length: 2795 nt

UniGene Fasta

>sp_v3.0_unigene15561
CGTCGTGACCTTGGCTGTCACTCATTTTTTGTTTGAGACGTTGGCCATGGCGGGTCCGATCTGATCCATAACCGAGCTCTGCTATATGTTTGAACCGAAATTCGATACATTGCCTGCATTTTATTCCAAACGAAACGAGACTCTACTCTTGATGCTGTGCGCTGTGATCGGAGGTTTTGGAGAACAATAAATCGTCGGCAGGAGTCGATCCTGGGGTGGTGATAAAACAGCAAAACTGGCGGAACACGCGTTACCTCGTCGCAGGTCCTTCCCTGCAAGGACTGCCATTGATATGGCCCCTTCGTTTTCACACTACAATGGTGGTGATGGTGGAGGTGGAGACGGAGATGCAGATGCAGATGCAGCTAGAACTCGAGCTGGCCACAGTGCGCTGGAAATTGAAGCGGCCATGAACAACATGTCGGGTGGTTTGAGTCCTCTCAGCCAATCTCTCTGGAAAAATACCACTGATACTACACAGATTGAAGACCTCTCTGTGTGGTTGACATGGAAGGACTTGACTGTTACTGTCACCAATGCTAAAGGAGAGCCGCATAGAGTTCTCCAAGGCTTGACGGGGTATGCTGAGCCTGGCTTTATTATGGCCATCATGGGGCCTTCTGGGTCTGGGAAATCTACTCTCCTTGACAGTTTAGCAGGGAGGTTGTCCAAGAATAGTTTTCAGACAGGAGAAATCCTTGTCAATGGCAGAAGGCGGACGCTTTCGTATGGAACTGTCGCTTATGTTACTCAAGAAGATACCCTCATCGGCACTCTAACGGTTCGAGAGTCGATCCACTATTCTGCCCATATCAGGCTTCCGGACAAAATGCCTCGAGAGGAGAAGATGGCCATTGTTGAGAGCACCATTATGGAAATGGGTCTTCAGGATTGTGCAGACACTCCGATTGGAAATTGGCATCTGCGAGGATTGAGTGGTGGAGAGAAGAGGCGCGTTAGCATTGCTCTGGAGATTCTCATGCGCCCTCGTTTGCTATTTCTGGATGAGCCAACCAGTGGTCTTGATAGTGCTTCGGCGTTCTTCGTCACACAAACTCTTAGAAATCTAGCCCGCGATGGAAGGACTGTGATTGCTTCCATTCACCAGCCCAGCAGTGAAGTGTTTACCTTGTTTGATTACCTGTATCTCCTGTCTGGAGGGCAGACTGTCTACTTTGGGGAAACAAGATCTGCCCACGAGTTCTTTGAACAAGCCGGTTTCCCATGCCCTCCACTGAGAAATCCTTCAGATCATTTCATTCGTTGCATTAATTCGGATTTCGACAGGGTCAAAGCTACTCTGAAGGGATCGTACAGGCTCAGAGCCACGGAATTGAATGACCCTCTTGACAAGATAAGCACAGGCCAAGCCATAAGAATTTTGATGGATCATTATAATTCCTCTGAGTATGCAATGCTGACAGCTGCGAGGGTTCATGAAATATCACAAATTAAAGGAACGGTCCTAGAATCGAACGGAAGTCAAGCTAGTTTCTTGATGCAGTGTTATACTTTGACAAAACGATCTTTCGTTAATATGACTAGAGATGTTGGATACTACTGGTTACGAGTTGTAATATACACATTCGTGACAATCTGCATTGGAACCATATACTACAACGTTGGAACTGATTATACTGCTATTTTGGCCAGAGGTTCCTGTGCGTCCTATGTTTCTGGATTCATGACATTCATGTCCATTGGAGGATTCCCTTCTTTTGTGGAGGATATGAAGGTTTTTCAGCGTGAAAGGTTCAATGGACACTACGGAGTGCTTGCTTTTGTCATTGCCAACACGCTGTCTTCAATGCCATATCTGGCACTTGTTGCAACAATATCCGGGACAATCACCTACTACATGGTGAAACTGCATCCTGGATTTACTCATTATTTATATTTTGTGCTGAACCTCTTCTCTTGCATGGCCGTTGTTGAGAGCTTGATGATGACAGTGGCCACCTTGGTGCCCAATTTCTTGATGGGAATCATTACAGGAGCAGGAATCCTGGGAATATACATGCTGGTTGCTGGATTTTTTCGTTTTCTGAAAGATCTCCCCAAACCAGTTTGGCGCTATCCCATGTCATATATTAGCTTCAACTCTTGGGCATTGCAGGGCCAATACAAGAACGACTTGCTTGGAATATATTTCAAACCGCAGATTGAAGGAATGCCCAAAATCAGTGGTGAATATATCTTAAAAAATGTGTTTGAAATCAATACAAAGCGGTCCAAATGGTTGGACTTGGTCATCATATTCTCAATGATTTTTATTTACCGCATGATCTTCTTTCTTATGATCAAATACAACGAGAAGATTGGCCCTTCCTTGCGAGCACGCTATGCAAAGCACAAGATGAGGTCATCGGGAAAGCAGGTCTCCATGAACACCGTAAGGCCTACTCCACCTGGCCATTCTGGTGAAGCAGGATCCTCTCCATCTTGAACCAAAAACACAACTTTGGTTGTGTGCAAGGACTTTCCTACTGAACAATGGTCGACTTTATCTACCCTATAAAGCCATGATTGGCTTTTTTGTATGTAGAATATGGATTCACTGATGTCCATGCAAGGACAGCCATTTCTGATTTCGAAAACCCATGTCTGCATGCATGTATAGAACTACAAAGTAAACAGCAATCTATGTTTGAACTTTGCCTTAGACTATTCATGTAATCTTCTTAGAAGTAAGAAAGCCAGAAGTCCGGGACTTGTAAGTCAGATTGCAATTATTATTAGGGTTTAATTTACGATTTATGGAATGATGCATTGATATATGGAAATGTATCCAAATC

Ace file of the UniGene sp_v3.0_unigene15561

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[V] COG1131 ABC-type multidrug transport system, ATPase component	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Sma3	White-brown-complex ABC transporter family	-	-	7.001e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	1.693e-14	-

Source	Gene names
Sma3	AT3G21090; At1g17840; At1g51460; At1g51500; At3g21090; B1003C08.13; B1126F07.104-1; B1126F07.104-2; CER5; CHLREDRAFT_142001; D3; F2H15.7; F5D21.6; F5D21.8; GSVIVT00004588001; GSVIVT00004590001; GSVIVT00006157001; GSVIVT00006159001; GSVIVT00006161001; GSVI

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	external side of plasma membrane	GO:0009897	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	fatty acid transporter activity	GO:0015245	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	lipid transport	GO:0006869	Biological Process	-
Sma3	wax biosynthetic process	GO:0010025	Biological Process	-
Sma3	fatty acid transport	GO:0015908	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Sodium:dicarboxylate symporter, conserved site	IPR018107	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G17840.1	WBC11, ABCG11, DSO, COF1, ATWBC11 white-brown complex homolog protein 11 chr1:6142870-6145894 FORWARD LENGTH=703	69%
RefSeq	Arabidopsis thaliana	NP_173226.2	ABC transporter G family member 11 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002331414.1	white-brown-complex ABC transporter family [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL31

Fln msg: your sequence is longer than subject: 718 - 676

Fln protein: MAPSFSHYNGGDGGGGDGDADADAARTRAGHSALEIEAAMNNMSGGLSPLSQSLWKNTTDTTQIEDLSVWLTWKDLTVTVTNAKGEPHRVLQGLTGYAEPGFIMAIMGPSGSGKSTLLDSLAGRLSKNSFQTGEILVNGRRRTLSYGTVAYVTQEDTLIGTLTVRESIHYSAHIRLPDKMPREEKMAIVESTIMEMGLQDCADTPIGNWHLRGLSGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRNLARDGRTVIASIHQPSSEVFTLFDYLYLLSGGQTVYFGETRSAHEFFEQAGFPCPPLRNPSDHFIRCINSDFDRVKATLKGSYRLRATELNDPLDKISTGQAIRILMDHYNSSEYAMLTAARVHEISQIKGTVLESNGSQASFLMQCYTLTKRSFVNMTRDVGYYWLRVVIYTFVTICIGTIYYNVGTDYTAILARGSCASYVSGFMTFMSIGGFPSFVEDMKVFQRERFNGHYGVLAFVIANTLSSMPYLALVATISGTITYYMVKLHPGFTHYLYFVLNLFSCMAVVESLMMTVATLVPNFLMGIITGAGILGIYMLVAGFFRFLKDLPKPVWRYPMSYISFNSWALQGQYKNDLLGIYFKPQIEGMPKISGEYILKNVFEINTKRSKWLDLVIIFSMIFIYRMIFFLMIKYNEKIGPSLRARYAKHKMRSSGKQVSMNTVRPTPPGHSGEAGSSPS*

Protein Length: 719

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTGTTTGAGACGTTGGCCATGGCGGGTCCGATCTGATCCATAACCGAGCTCTGCTATATGTTTGAACCGAAATTCGATACATTGCCTGCATTTTATTCCAAACGAAACGAGACTCTACTCTTGATGCTGTGCGCTGTGATCGGAGGTTTTGGAGAACAATAAATCGTCGGCAGGAGTCGATCCTGGGGTGGTGATAAAACAGCAAAACTGGCGGAACACGCGTTACCTCGTCGCAGGTCCTTCCCTGCAAGGACTGCCATTGAT_-_ATGGCCCCTTCGTTTTCACACTACAATGGTGGTGATGGTGGAGGTGGAGACGGAGATGCAGATGCAGATGCAGCTAGAACTCGAGCTGGCCACAGTGCGCTGGAAATTGAAGCGGCCATGAACAACATGTCGGGTGGTTTGAGTCCTCTCAGCCAATCTCTCTGGAAAAATACCACTGATACTACACAGATTGAAGACCTCTCTGTGTGGTTGACATGGAAGGACTTGACTGTTACTGTCACCAATGCTAAAGGAGAGCCGCATAGAGTTCTCCAAGGCTTGACGGGGTATGCTGAGCCTGGCTTTATTATGGCCATCATGGGGCCTTCTGGGTCTGGGAAATCTACTCTCCTTGACAGTTTAGCAGGGAGGTTGTCCAAGAATAGTTTTCAGACAGGAGAAATCCTTGTCAATGGCAGAAGGCGGACGCTTTCGTATGGAACTGTCGCTTATGTTACTCAAGAAGATACCCTCATCGGCACTCTAACGGTTCGAGAGTCGATCCACTATTCTGCCCATATCAGGCTTCCGGACAAAATGCCTCGAGAGGAGAAGATGGCCATTGTTGAGAGCACCATTATGGAAATGGGTCTTCAGGATTGTGCAGACACTCCGATTGGAAATTGGCATCTGCGAGGATTGAGTGGTGGAGAGAAGAGGCGCGTTAGCATTGCTCTGGAGATTCTCATGCGCCCTCGTTTGCTATTTCTGGATGAGCCAACCAGTGGTCTTGATAGTGCTTCGGCGTTCTTCGTCACACAAACTCTTAGAAATCTAGCCCGCGATGGAAGGACTGTGATTGCTTCCATTCACCAGCCCAGCAGTGAAGTGTTTACCTTGTTTGATTACCTGTATCTCCTGTCTGGAGGGCAGACTGTCTACTTTGGGGAAACAAGATCTGCCCACGAGTTCTTTGAACAAGCCGGTTTCCCATGCCCTCCACTGAGAAATCCTTCAGATCATTTCATTCGTTGCATTAATTCGGATTTCGACAGGGTCAAAGCTACTCTGAAGGGATCGTACAGGCTCAGAGCCACGGAATTGAATGACCCTCTTGACAAGATAAGCACAGGCCAAGCCATAAGAATTTTGATGGATCATTATAATTCCTCTGAGTATGCAATGCTGACAGCTGCGAGGGTTCATGAAATATCACAAATTAAAGGAACGGTCCTAGAATCGAACGGAAGTCAAGCTAGTTTCTTGATGCAGTGTTATACTTTGACAAAACGATCTTTCGTTAATATGACTAGAGATGTTGGATACTACTGGTTACGAGTTGTAATATACACATTCGTGACAATCTGCATTGGAACCATATACTACAACGTTGGAACTGATTATACTGCTATTTTGGCCAGAGGTTCCTGTGCGTCCTATGTTTCTGGATTCATGACATTCATGTCCATTGGAGGATTCCCTTCTTTTGTGGAGGATATGAAGGTTTTTCAGCGTGAAAGGTTCAATGGACACTACGGAGTGCTTGCTTTTGTCATTGCCAACACGCTGTCTTCAATGCCATATCTGGCACTTGTTGCAACAATATCCGGGACAATCACCTACTACATGGTGAAACTGCATCCTGGATTTACTCATTATTTATATTTTGTGCTGAACCTCTTCTCTTGCATGGCCGTTGTTGAGAGCTTGATGATGACAGTGGCCACCTTGGTGCCCAATTTCTTGATGGGAATCATTACAGGAGCAGGAATCCTGGGAATATACATGCTGGTTGCTGGATTTTTTCGTTTTCTGAAAGATCTCCCCAAACCAGTTTGGCGCTATCCCATGTCATATATTAGCTTCAACTCTTGGGCATTGCAGGGCCAATACAAGAACGACTTGCTTGGAATATATTTCAAACCGCAGATTGAAGGAATGCCCAAAATCAGTGGTGAATATATCTTAAAAAATGTGTTTGAAATCAATACAAAGCGGTCCAAATGGTTGGACTTGGTCATCATATTCTCAATGATTTTTATTTACCGCATGATCTTCTTTCTTATGATCAAATACAACGAGAAGATTGGCCCTTCCTTGCGAGCACGCTATGCAAAGCACAAGATGAGGTCATCGGGAAAGCAGGTCTCCATGAACACCGTAAGGCCTACTCCACCTGGCCATTCTGGTGAAGCAGGATCCTCTCCATCTTGA___ACCAAAAACACAACTTTGGTTGTGTGCAAGGACTTTCCTACTGAACAATGGTCGACTTTATCTACCCTATAAAGCCATGATTGGCTTTTTTGTATGTAGAATATGGATTCACTGATGTCCATGCAAGGACAGCCATTTCTGATTTCGAAAACCCATGTCTGCATGCATGTATAGAACTACAAAGTAAACAGCAATCTATGTTTGAACTTTGCCTTAGACTATTCATGTAATCTTCTTAGAAGTAAGAAAGCCAGAAGTCCGGGACTTGTAAGTCAGATTGCAATTATTATTAGGGTTTAATTTACGATTTATGGAATGATGCATTGATATATGGAAATGTATCCAAATC

Fln Alignment:

Contig15561___VWLTWKDLTVTVTNAKGEPHR-VLQGLTGYAEPGFIMAIMGPSGSGKSTLLDSLAGRL--SKNSFQTGEILVNGRRRTLSYGTVAYVTQEDTLIGTLTVRESIHYSAHIRLPDKMPREEKMAIVESTIMEMGLQDCADTPIGNWHLRGLSGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRNLARDGRTVIASIHQPSSEVFTLFDYLYLLSGGQTVYFGETRSAH-EFFEQAGFPCPPLRNPSDHFIRCINSDFDRVKATLKGSYRLRATELNDPLDKISTGQAIRILMDHYNSSEYAMLTAARVHEISQIKGTVLESNGSQASFLMQCYTLTKRSFVNMTRDVGYYWLRVVIYTFVTICIGTIYYNVGTDYTAILARGSCASYVSGFMTFM-----SIGGFPSFVEDMKVFQRERFNGHYGVLAFVIANTLSSMPYLALVATISGTITYYMVKLHPGFTHYLYFVLNLFSCMAVVES-----LMMTVATLVPNFLMGIITGAGILGIYMLVAGFFRFLKDLPKPVWRYPMSYISFNSWALQGQYKNDLLGIYFKPQIEGMPKISGEYILKNV
B8LL31_______________VTLQWRNITCTLSDKARKLTRFLLTNASGEAKAGRLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLTGQLYVNGSPFYMASPKIAFVRQEDLFFSQLTVRETLSLAAELQLSKLSTPKDREKYVNDLIFRLGLVSCADCVVGDAKVRGISGGEKKRLSVACELIASPSVIFADEPTTGLDAFQAEMVMETLRQLAQEGHTVVCSIHQPRGSIYTKFDDLILLSEGAVVYAGPAKEEPLLYFAEHGFICQEHVNPAEFFADLISIDYSSSE-----SEHLSRKRIDDMIEAFANKFSTMPDLKHGNLG-FGMET-DKVSMKSRRKSVTPGKGGWWKQFRL----LLKRAWMQATRDGPTNKVRARMSVASALIFGSIFWRMGLSQTSIQDRMGLLQ-VAAINTAMAALTKTVSVFP---KERAIIDRERAKGSYALGPYLFAKLLAEIPVGAAFPLVFGIILYPMARLHPSLLRF-----GTFSSIVTVESFAASAMGLTVGAMVPTTEAAMALGPSLMTVFIVFGGYYVNSENTP-TVFRW-IPRISLIRWAFQALCINEFKGLKFEQQ-QSFDLQTGEQVLERL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
2229		85		14	0.993533
2286	89		10		0.999919
2356	89		10		0.999919

SSRs (tot: 1)

Start position	End position	Sequence	Length
346	365	AGATGC AGATGC AGATGC AG	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain