SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15560

Length: 4038 nt

UniGene Fasta

>sp_v3.0_unigene15560
CACAAACCCAAACCCAAACCCCCCCTTGGTTCTGCTTCGCCCAGGTTGTTCCCCATGTGCCCGGCCCCTTTTTACATCTAGGTTTCTTTATCCCTTTCGGTCCATCCTAACTGGTTTGCCATTCCATCAGAGATTTCCTTTACCCATTTAGCTGTCTTTAGTTCCAGCCATAACGCTATCCCTGATCTTCGTTTTGGGAGCTAAAACTTGGGCCCATTGTAGTCCCCTTTGCCGATACCCGATACAACTGTTATTGAGCACGCTTGATTTTGGCATGAATCACAAACCGTGCAGGTTTCTCAGGTCCTGACGCATGGGTTTTTTAATTTGTAAGCTAATGGTTATAGATGCTTTTGAGACCAAATTTCAGATTTGGGTAGACAGGCTCAGTGGGTGGTTTTAACTAATATTTTTGAGGCGAAGTTTTAAGATTTGGGTCCCTGGGTGTCTCTGTTTTATGGTAGTGCAGGTTCATCATCGGCATTTGAGATCTTGAAGGGGTGACCTTCCGACTAGAAGGGCAAATCAGCAGAATTATTGAATTGCAGGAGCACTGTTAAGGGTTTGAAAATTTAGTAGGATGCGAGTGTCTACAGCTGCCCTATGGTGATGTGCGATGTGAGGGACACAAATGCGGGCAGATATGCAGGTTTAGCTGCTGCTGATCATGGTAGCGGCTTATCCCGCTGCGGCTTCTCTGCAGCAGGCACAACTCACAGAATCTCAGCAGCAGCAGAAGAAATTAGAGGAGAATGGGCGAGCCCCCTTGGCACTCTCTGAGAAAAATAATGGCATTCCCCGCAAGCCTCGGAGCAGGGAAGTCACATCCAGGTATAAGACTGCCACTACGTCTTCTTCTGGGCCTCCGACGACTTCTGCCAGACGGTGCCCATCTCCCACTGTTGGTCGAATTCTCCCAACACCAGATGCCCTCACTCTTAAGCGAGCACAGTCTGCCGAGAGGAGACGCCCATCTCCATCACCTACCCCGGTGGCAGATTCAAAGGTAGCTAATGGGTCGTTGGATGCTGGCAAACGCATTCCTGGACGCGGTCCGGAAGGCCTCTGGCCTTCAACGCGCAGCTTATCTGTTTCCATGCAGAGGGATTCTTTCTCATCCAGAGAGAAGTCCAACGGCCATACCGTTGATCATACGCTTAAGCCCGCAGCAAATATTGTGCAGAGAACGGGGGATTCAGCTTCAAATTTACAGCGGAAGGCGACCCCTGAGAGGAAGGCGACCCCCGAGAGGAAGGGGACCCCCGAGAGGAAGAGGACGCCCCGTAGACAAAGTACTGAATCTGAAAATGCAAGGCCTGTAGATAATTCACACTCAAAACCGGATCAACATCGTTGGCCAGGCAAAAGCAGTGCAAAGGTAATTGGAAATGCATTGACCAGGAGCGTGGATCTTACAGATAGACCAAGTAGGGTGGCCAGCCTTTTAATGCAAGGCCAGTCAGCATTGGGTCTGGCAGGTACCCCGAGGTCTGTTGCTGTAAATAGGGCTTTTCAGCGGTCCATTAACGAGGGTCCTGTCGGAAATGGGACATCTAATGCTGCAAGGCGTGCATCTTTTGATGGAAGAATAAGGGTTGCATCAAAATCGATCGATCCCTGTCCAACAGAAGCTTCTAATTCAGGGAAATCAAATGTAATAATAGATGAAAACAATCGACCCGGACAACCACCTCAAGAGGTAGAACACCCAGCCTCAGACGCTTGCACTAGTGCCTGTGACCTTGCGTCCGACGACTCCGAGAGTGTGTCCTCTGGTAGCAACTCTGTGGCACACGAAACTACCAGTATCAGTCAAAGAAGTAGTTCTGGAGGTCTCATAAGCCGAAATACAACGGTTCCGCCTCGTTTTTGGCAGGAAACTAATAACAGATTGCATCGTTTGTCAGGGGTGCGGTCGTCTGCGCCGGAATCTGATATATCATCAGGGTTCCCTAGGTCAACGGCACGCTCAAAGGTTGTATCATCAGCAACTGGTCATATAATGAATGGGCCAGAACGAGCAATATCCTCTCCACGGTTTGCGAATCGGTTTCAGGCAACACCACTTTCAGGGCCGCAACATTCTGTTTCCCCAATCAAGGTGATGGCCTCATCTTCTCCCTCAAGAGGCCTACCAAGTCCAACAAGGACACGACTACCACCGTCGGTGCCTCCAACGAATTCTTTACACGTACGTTCGCACAGTACATCGTCAGTGCTCGGTGCATCATCTCTGCTAAACTTTGGTGTTGATGTTCGAAAGGGGAAGAAGGGGACGAGCCAGGTAGAAGAGGCCCATCATCTGCGTATACTTCACAACAGATTATTGCAATGGCGATTTGTTAATGCCAGAGCAGAAGCTGCCATGAATGCTCAGAAAGTCACAGCTGAGAAACTGCTTTACAATGTCTGGGTTACAACTTCAGAACTGCGAAATTCTGTAACAATGAAGCGAATCAAGCTGCAACAAGTGAGGCAAGAAAACAAGCTTAGTTCCATTCTCAGAGGACAGATGTTATATCTGGAAGAATGGGCATTGCTGGAAAGAGATCATTCAAATTCTTTATCAGGAGCTGTTGAAGCTCTGGAAGCTGCAACTCTTCGGCTTCCAGTCACTGGTGGTGCAAGGGCTGATATTCAAGCAGTGAAGGAAGCTGTTAGTTCTGCGGTTGATGTGATGCAAGCAATGGGTTCCTCCATTTGCTCGTTGTTGCCAAAGGTAGAGGGGATGAATCATCTAGTTTCTGAGCTTGCAGAGGTTGCTGCTCAAGAGAAAGCCTTATTGGATGAATGTGTAGATTTTTTAGCTACAACAGCAGCAATGGAGGTAGAGGAATCCAGTTTGAGGGCACATTCAATTCAACTAAAACAAGGGAGATGTTGGGGTTCAGAAAAGTCAATGGACAATAGTGCAGTTGCTGTAGATTTTGGACAACGAAATCCGACATAAGGAGATTTTTTAGTTTGTATGATGTATCATTTTTATTGTGAGACTAATGGTTGATCAAGCTGCTTTTGCACTGACGTGGAAAAGTTGGAGGTGGAGGCCACTTTGCTTCTTGCTGCAGGAATGGCATCTTGCGTCTCAAGCCAAAGGTAGTAAAAGAAATGTAAAATAGTTAGTTGCTTTGTCTGGATCTGCTGCATTTGTTTCTTGTGCATGAAGATTCTCTCTAATGTCTATATTAACATGGTCTAATGCTCACCTTTCAAGAAAATCTTGATACACATTGCAGTGATTTGTATACACATTTTCATCAAATCTGGGTTCCAAAATCAGTTTGATGTGATATTTTACATGTAAGCGGTGTACTTCAGAAGATTGCATGCCCTGTTCCCACTTTTTGACTGGGGACCTGTTATAAACCTTCGGGATTAGTGCCGTTTTGCACACTCTATTTTTTATCCGTTATTGAACATGTACTTTGACAAAAGAAAGCCAAATGAATTGTATCTCTAATTCTTGGCTTTGCGATTACAAGCATTTTGAAACCAGCTAGCAAAGGCTGTTACTCAATTACTTGTCTCTACTATATGGCTGGGTTACATGTCAAATCCAACTGTATTTCATATAATGAATCTCTCTTATTTTTGAAAGATTTACACGGCTATATGACTGGCTATATGACTGGTTTATGTATAGTTAGTGCTATACAAGCTTCATTAAGCCAATATGAACAGAAACCCATTGTATAATGAAGGGGCATCGCAAAAGCGTGCCTTCAGTCCCTTGGAAGTTCAATTGTTATATCTACGTTTTGCTACTTTCCTTTGGGACTATAAGACAGATTCGGGATATGTTGTGCCTGTTTTGCACAAAATCAGGCATAGAACACATTTTATGCCCATTTGGATTGTATGATGCCAAGACAAACATCATTTATGACAGCAAGCTCAGTGAGTCTCTTATCAATGAACTTTGGAAGGTCACCATGATTGTCTCAGGCATCAAATATGTTGGATTGTAAATATTTGTTTTGCTCATTATTAACTCCTCATACATCATAGGTCTCATTTTAGTCTCAATGCTGTTCATTT

Ace file of the UniGene sp_v3.0_unigene15560

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF566 domain containing protein	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	Gene names
Sma3	GSVIVT00001450001; LOC_Os03g10820; LOC_Os10g20510; OSJNBa0045C13.7; OsI_10450; OsI_24673; OsI_31410; OsI_33160; OsJ_09841; OsJ_12689; OsJ_22877; OsJ_31172; PHYPADRAFT_100775; POPTRDRAFT_560048; POPTRDRAFT_653603; POPTRDRAFT_663751; POPTRDRAFT_672033; POPT

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF566	IPR007573	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMQ1

Fln msg: your sequence is longer than subject: 761 - 167

Fln protein: MVAAYPAAASLQQAQLTESQQQQKKLEENGRAPLALSEKNNGIPRKPRSREVTSRYKTATTSSSGPPTTSARRCPSPTVGRILPTPDALTLKRAQSAERRRPSPSPTPVADSKVANGSLDAGKRIPGRGPEGLWPSTRSLSVSMQRDSFSSREKSNGHTVDHTLKPAANIVQRTGDSASNLQRKATPERKATPERKGTPERKRTPRRQSTESENARPVDNSHSKPDQHRWPGKSSAKVIGNALTRSVDLTDRPSRVASLLMQGQSALGLAGTPRSVAVNRAFQRSINEGPVGNGTSNAARRASFDGRIRVASKSIDPCPTEASNSGKSNVIIDENNRPGQPPQEVEHPASDACTSACDLASDDSESVSSGSNSVAHETTSISQRSSSGGLISRNTTVPPRFWQETNNRLHRLSGVRSSAPESDISSGFPRSTARSKVVSSATGHIMNGPERAISSPRFANRFQATPLSGPQHSVSPIKVMASSSPSRGLPSPTRTRLPPSVPPTNSLHVRSHSTSSVLGASSLLNFGVDVRKGKKGTSQVEEAHHLRILHNRLLQWRFVNARAEAAMNAQKVTAEKLLYNVWVTTSELRNSVTMKRIKLQQVRQENKLSSILRGQMLYLEEWALLERDHSNSLSGAVEALEAATLRLPVTGGARADIQAVKEAVSSAVDVMQAMGSSICSLLPKVEGMNHLVSELAEVAAQEKALLDECVDFLATTAAMEVEESSLRAHSIQLKQGRCWGSEKSMDNSAVAVDFGQRNPT*

Protein Length: 762

Fln nts: CACAAACCCAAACCCAAACCCCCCCTTGGTTCTGCTTCGCCCAGGTTGTTCCCCATGTGCCCGGCCCCTTTTTACATCTAGGTTTCTTTATCCCTTTCGGTCCATCCTAACTGGTTTGCCATTCCATCAGAGATTTCCTTTACCCATTTAGCTGTCTTTAGTTCCAGCCATAACGCTATCCCTGATCTTCGTTTTGGGAGCTAAAACTTGGGCCCATTGTAGTCCCCTTTGCCGATACCCGATACAACTGTTATTGAGCACGCTTGATTTTGGCATGAATCACAAACCGTGCAGGTTTCTCAGGTCCTGACGCATGGGTTTTTTAATTTGTAAGCTAATGGTTATAGATGCTTTTGAGACCAAATTTCAGATTTGGGTAGACAGGCTCAGTGGGTGGTTTTAACTAATATTTTTGAGGCGAAGTTTTAAGATTTGGGTCCCTGGGTGTCTCTGTTTTATGGTAGTGCAGGTTCATCATCGGCATTTGAGATCTTGAAGGGGTGACCTTCCGACTAGAAGGGCAAATCAGCAGAATTATTGAATTGCAGGAGCACTGTTAAGGGTTTGAAAATTTAGTAGGATGCGAGTGTCTACAGCTGCCCTATGGTGATGTGCGATGTGAGGGACACAAATGCGGGCAGATATGCAGGTTTAGCTGCTGCTGATC_-_ATGGTAGCGGCTTATCCCGCTGCGGCTTCTCTGCAGCAGGCACAACTCACAGAATCTCAGCAGCAGCAGAAGAAATTAGAGGAGAATGGGCGAGCCCCCTTGGCACTCTCTGAGAAAAATAATGGCATTCCCCGCAAGCCTCGGAGCAGGGAAGTCACATCCAGGTATAAGACTGCCACTACGTCTTCTTCTGGGCCTCCGACGACTTCTGCCAGACGGTGCCCATCTCCCACTGTTGGTCGAATTCTCCCAACACCAGATGCCCTCACTCTTAAGCGAGCACAGTCTGCCGAGAGGAGACGCCCATCTCCATCACCTACCCCGGTGGCAGATTCAAAGGTAGCTAATGGGTCGTTGGATGCTGGCAAACGCATTCCTGGACGCGGTCCGGAAGGCCTCTGGCCTTCAACGCGCAGCTTATCTGTTTCCATGCAGAGGGATTCTTTCTCATCCAGAGAGAAGTCCAACGGCCATACCGTTGATCATACGCTTAAGCCCGCAGCAAATATTGTGCAGAGAACGGGGGATTCAGCTTCAAATTTACAGCGGAAGGCGACCCCTGAGAGGAAGGCGACCCCCGAGAGGAAGGGGACCCCCGAGAGGAAGAGGACGCCCCGTAGACAAAGTACTGAATCTGAAAATGCAAGGCCTGTAGATAATTCACACTCAAAACCGGATCAACATCGTTGGCCAGGCAAAAGCAGTGCAAAGGTAATTGGAAATGCATTGACCAGGAGCGTGGATCTTACAGATAGACCAAGTAGGGTGGCCAGCCTTTTAATGCAAGGCCAGTCAGCATTGGGTCTGGCAGGTACCCCGAGGTCTGTTGCTGTAAATAGGGCTTTTCAGCGGTCCATTAACGAGGGTCCTGTCGGAAATGGGACATCTAATGCTGCAAGGCGTGCATCTTTTGATGGAAGAATAAGGGTTGCATCAAAATCGATCGATCCCTGTCCAACAGAAGCTTCTAATTCAGGGAAATCAAATGTAATAATAGATGAAAACAATCGACCCGGACAACCACCTCAAGAGGTAGAACACCCAGCCTCAGACGCTTGCACTAGTGCCTGTGACCTTGCGTCCGACGACTCCGAGAGTGTGTCCTCTGGTAGCAACTCTGTGGCACACGAAACTACCAGTATCAGTCAAAGAAGTAGTTCTGGAGGTCTCATAAGCCGAAATACAACGGTTCCGCCTCGTTTTTGGCAGGAAACTAATAACAGATTGCATCGTTTGTCAGGGGTGCGGTCGTCTGCGCCGGAATCTGATATATCATCAGGGTTCCCTAGGTCAACGGCACGCTCAAAGGTTGTATCATCAGCAACTGGTCATATAATGAATGGGCCAGAACGAGCAATATCCTCTCCACGGTTTGCGAATCGGTTTCAGGCAACACCACTTTCAGGGCCGCAACATTCTGTTTCCCCAATCAAGGTGATGGCCTCATCTTCTCCCTCAAGAGGCCTACCAAGTCCAACAAGGACACGACTACCACCGTCGGTGCCTCCAACGAATTCTTTACACGTACGTTCGCACAGTACATCGTCAGTGCTCGGTGCATCATCTCTGCTAAACTTTGGTGTTGATGTTCGAAAGGGGAAGAAGGGGACGAGCCAGGTAGAAGAGGCCCATCATCTGCGTATACTTCACAACAGATTATTGCAATGGCGATTTGTTAATGCCAGAGCAGAAGCTGCCATGAATGCTCAGAAAGTCACAGCTGAGAAACTGCTTTACAATGTCTGGGTTACAACTTCAGAACTGCGAAATTCTGTAACAATGAAGCGAATCAAGCTGCAACAAGTGAGGCAAGAAAACAAGCTTAGTTCCATTCTCAGAGGACAGATGTTATATCTGGAAGAATGGGCATTGCTGGAAAGAGATCATTCAAATTCTTTATCAGGAGCTGTTGAAGCTCTGGAAGCTGCAACTCTTCGGCTTCCAGTCACTGGTGGTGCAAGGGCTGATATTCAAGCAGTGAAGGAAGCTGTTAGTTCTGCGGTTGATGTGATGCAAGCAATGGGTTCCTCCATTTGCTCGTTGTTGCCAAAGGTAGAGGGGATGAATCATCTAGTTTCTGAGCTTGCAGAGGTTGCTGCTCAAGAGAAAGCCTTATTGGATGAATGTGTAGATTTTTTAGCTACAACAGCAGCAATGGAGGTAGAGGAATCCAGTTTGAGGGCACATTCAATTCAACTAAAACAAGGGAGATGTTGGGGTTCAGAAAAGTCAATGGACAATAGTGCAGTTGCTGTAGATTTTGGACAACGAAATCCGACATAA___GGAGATTTTTTAGTTTGTATGATGTATCATTTTTATTGTGAGACTAATGGTTGATCAAGCTGCTTTTGCACTGACGTGGAAAAGTTGGAGGTGGAGGCCACTTTGCTTCTTGCTGCAGGAATGGCATCTTGCGTCTCAAGCCAAAGGTAGTAAAAGAAATGTAAAATAGTTAGTTGCTTTGTCTGGATCTGCTGCATTTGTTTCTTGTGCATGAAGATTCTCTCTAATGTCTATATTAACATGGTCTAATGCTCACCTTTCAAGAAAATCTTGATACACATTGCAGTGATTTGTATACACATTTTCATCAAATCTGGGTTCCAAAATCAGTTTGATGTGATATTTTACATGTAAGCGGTGTACTTCAGAAGATTGCATGCCCTGTTCCCACTTTTTGACTGGGGACCTGTTATAAACCTTCGGGATTAGTGCCGTTTTGCACACTCTATTTTTTATCCGTTATTGAACATGTACTTTGACAAAAGAAAGCCAAATGAATTGTATCTCTAATTCTTGGCTTTGCGATTACAAGCATTTTGAAACCAGCTAGCAAAGGCTGTTACTCAATTACTTGTCTCTACTATATGGCTGGGTTACATGTCAAATCCAACTGTATTTCATATAATGAATCTCTCTTATTTTTGAAAGATTTACACGGCTATATGACTGGCTATATGACTGGTTTATGTATAGTTAGTGCTATACAAGCTTCATTAAGCCAATATGAACAGAAACCCATTGTATAATGAAGGGGCATCGCAAAAGCGTGCCTTCAGTCCCTTGGAAGTTCAATTGTTATATCTACGTTTTGCTACTTTCCTTTGGGACTATAAGACAGATTCGGGATATGTTGTGCCTGTTTTGCACAAAATCAGGCATAGAACACATTTTATGCCCATTTGGATTGTATGATGCCAAGACAAACATCATTTATGACAGCAAGCTCAGTGAGTCTCTTATCAATGAACTTTGGAAGGTCACCATGATTGTCTCAGGCATCAAATATGTTGGATTGTAAATATTTGTTTTGCTCATTATTAACTCCTCATACATCATAGGTCTCATTTTAGTCTCAATGCTGTTCATTT

Fln Alignment:

Contig15560___MKRIKLQQVRQENKLSSILRGQMLYLEEWALLERDHSNSLSGAVEALEAATLRLPVTGGARADIQAVKEAVSSAVDVMQAMGSSICSLLPKVEGMNHLVSELAEVAAQEKALLDECVDFLATTAAMEVEESSLRAHSIQLKQGRCWGSEKSMDNSAVAVDFGQRNPT
B8LMQ1_______________MKRIKLQQVRQENKLSSILRGQMLYLEEWALLERDHSSSLSGAVEALEAATLRLPVTGGARADIQAVKEAVSSAVDVMQAMGSSICSLLPKVEGMNHLVSELAEVAAQEKSLLDECVDFLATTAAMEVEESSLRAHSIQLKQGRCWGSEKSINSGAVAVDFGQRNPT

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
1703	11			88	0.923564
1705			88	11	0.923564
1706	88		11		0.923564
1707	88			11	0.923564
1803	12			87	0.992554
1805		87		12	0.992554
1806		87	12		0.992554
1807	87			12	0.992554
1838	25			75	1.0
2023	28		71		1.0
2521		11		88	0.923564
2687		88		11	0.923564
2718	83		16		0.994512
2719	83	16			0.994512
3327		20		80	0.995493
3489			14	85	0.993533
3490			14	85	0.993533
3491			14	85	0.993533
3517		14		85	0.993533
3781	10	90			0.90298
3841		12		87	0.992554
3842	12			87	0.992554
3908		20		80	0.995493
3920	75		25		0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
3	21	CAAACC CAAACC CAAACC C	19
725	736	CAG CAG CAG CAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain