SustainPineDB

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Assembly info
Unigenes
SNPs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15453

Length: 385 nt

UniGene Fasta

>sp_v3.0_unigene15453
GCCCTCTTCGGCTGTGATAATGGATACTGGTAACTTGGTCGTGCTGAGTGCTGAGAATACCTCTGAAAGTATTTGGCAGAGCTTCGACCACCCAGCTGGAGATACGTGGTTGCCAGGGATGAAGATCAGTACGGGCCAGAAGATAACGTCGTGGAAGAATCCTTGGGATCCAAGTCCGGGGCCTTACGCCCTTCAGATGGATCCAAATGGAGCCGAGGAGTTCGTGCTGACGTGGAAGAATCAGACCATATACTGGGATACGGGCGTCTGGAATGGCAAATATTTTCCCAACACTCCCAATATGACGCCAATTCCCCTCCACAATTACAGCTATTTCAATAACGGTACGTACAAGTATTTCATCTATTCTTATGCAAATCATGGA

Ace file of the UniGene sp_v3.0_unigene15453

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S-receptor kinase, putative n=1 Tax=Ricinus communis RepID=B9RHL2_RICCO	-	-	3.0e-30	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%

Source	Gene names
Sma3	RCOM_1760110;

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRA5

Fln msg: Distance to subject end: 247 aas, your sequence is shorter than subject: 128 - 495

Fln protein: PSSAVIMDTGNLVVLSAENTSESIWQSFDHPAGDTWLPGMKISTGQKITSWKNPWDPSPGPYALQMDPNGAEEFVLTWKNQTIYWDTGVWNGKYFPNTPNMTPIPLHNYSYFNNGTYKYFIYSYANHG

Protein Length: 129

Fln nts: GCCCTCTTCGGCTGTGATAATGGATACTGGTAACTTGGTCGTGCTGAGTGCTGAGAATACCTCTGAAAGTATTTGGCAGAGCTTCGACCACCCAGCTGGAGATACGTGGTTGCCAGGGATGAAGATCAGTACGGGCCAGAAGATAACGTCGTGGAAGAATCCTTGGGATCCAAGTCCGGGGCCTTACGCCCTTCAGATGGATCCAAATGGAGCCGAGGAGTTCGTGCTGACGTGGAAGAATCAGACCATATACTGGGATACGGGCGTCTGGAATGGCAAATATTTTCCCAACACTCCCAATATGACGCCAATTCCCCTCCACAATTACAGCTATTTCAATAACGGTACGTACAAGTATTTCATCTATTCTTATGCAAATCATGGA

Fln Alignment:

Contig15453___IMDTGNLVVLSAENTSESIWQSFDHPAGDTWLPGMKISTGQKITSWKNPWDPSPGPYALQMDPNGAEEFVLTWKNQTIYW
B8LRA5_______________LLDSGNLQLKDQKRIE---WQSFDHPT-DTLLQGQNLSASMKLISAASALDLSEGPYSLEME---VTSMVLSWRSEQVYW

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
99			75	25	0.996473
258	75		25		0.996473
265		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain