SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15356

Length: 495 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene15356
CAGAGAAGCTATGGAAGACACAAAAGTGAAAGGTTATGTTATTCCCAAAGGATGGGTAATTTTTGCATTTACCACAGCTAACCATCTAGATAAAAAGTTCGATGCACCTCTGAAGTTTGATCCATGGCGATGGCAACAAAATCAGGATTCTTCATATGATCCATTTTACATACCTTTTGGTGCTGGAGCCAGGCTTTGCCCAGGATATAATCTAGCTAAACTTGAGTTGGCTCTTTTTTTCCACATTTTCATAACAAGATTCAGATGGGAAACACTTGCAAATGATAAGATCTCATATCTTCCGTTACCTCACTTGACCAAGGGCCTTCCGATTCGCCTCCATCCTCGGGAATGAGGATATGATTTATTTATATAAACATCATATTTTTAATTCATAGTTATGGAAAAAATTACAATAAATTTTTGAGAAATTCAGAAGGAAATATTGTATTTAATTTTTTATTATTATAGGTAATTATAGTACTTGTTACTTTC

Ace file of the UniGene sp_v3.0_unigene15356 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Abietadienol/abietadienal oxidase; Short=PtAO; AltName: Full=Cytochrome P450 720B1; AltName: Full=Cytochrome P450 CYPA gb\|AAX07431.1\| cytochrome P450 CYPA [Pinus taeda]	-	-	8.0e-39	64%
FL-Next	tr=CYP720B8; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	4.832e-06	-

Source	Gene names
Sma3	CYP720B1; CYP720B2;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G73340.1	Cytochrome P450 superfamily protein chr1:27573136-27575273 FORWARD LENGTH=514	2.0e-30	45%
RefSeq	Arabidopsis thaliana	NP_177477.3	Cytochrome P450 superfamily protein [Arabidopsis thaliana]	2.0e-30	45%
RefSeq	Populus trichocarpa	XP_002332325.1	cytochrome P450 [Populus trichocarpa]	2.0e-29	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E5FA74

Fln msg: your sequence is shorter than subject: 118 - 475

Fln protein: REAMEDTKVKGYVIPKGWVIFAFTTANHLDKKFDAPLKFDPWRWQQNQDSSYDPFYIPFGAGARLCPGYNLAKLELALFFHIFITRFRWETLANDKISYLPLPHLTKGLPIRLHPRE*

Protein Length: 119

Fln nts: CAGAGAAGCTATGGAAGACACAAAAGTGAAAGGTTATGTTATTCCCAAAGGATGGGTAATTTTTGCATTTACCACAGCTAACCATCTAGATAAAAAGTTCGATGCACCTCTGAAGTTTGATCCATGGCGATGGCAACAAAATCAGGATTCTTCATATGATCCATTTTACATACCTTTTGGTGCTGGAGCCAGGCTTTGCCCAGGATATAATCTAGCTAAACTTGAGTTGGCTCTTTTTTTCCACATTTTCATAACAAGATTCAGATGGGAAACACTTGCAAATGATAAGATCTCATATCTTCCGTTACCTCACTTGACCAAGGGCCTTCCGATTCGCCTCCATCCTCGGGAATGA___GGATATGATTTATTTATATAAACATCATATTTTTAATTCATAGTTATGGAAAAAATTACAATAAATTTTTGAGAAATTCAGAAGGAAATATTGTATTTAATTTTTTATTATTATAGGTAATTATAGTACTTGTTACTTTC

Fln Alignment:

Contig15356___REAMEDTKVKGYVIPKGWVIFAFTTANHLDKKFDAPLKFDPWRWQQNQDSSYDPFYIPFGAGARLCPGYNLAKLELALFFHIFITRFRWETLANDKISYLPLPHLTKGLPIRLHP
E5FA74_______________REAMEDTKIKGYLIPKGWVIFAFTTSSHLDKKFHEPLTFDPWRWQRDQDSSYDPLYIPFGAGARLCPGYHLAKLELALFFHIFITRFRWETLANDKVSYLPLPHLTKGFPIRLHP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain