SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15331

Length: 2043 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene15331
CTGAACCTACCTACCATAAGAACAGAACAGTGCGCATTACCATTTTCCAGAAGATTTTAGCTCGGACGACCAGTGAGCCAGGTCGTGGATTCGAACATGGCAAGCTACAGGATCGCTCTTTTTCTGAAGAATGCCTTGTCGTCTGGTGACGAATTTCTTCTTGTGCGTGAAAATCTGCCATCTGCAATTCCTGTGGATGATGATGAATTCAGGCATCCTCGCTATGCAGATTCTGATTTGTGGGATATCCCCTCCGCTGCTTTATCTCCTCATTCAACTAAAACTCAGTTGGATCCCGCCTTCCAGACAGTTGTTCAAGACGTGCAACATGCACTTCAAAACCTGGAGCTGCGCGGATTTGATATCTCCTCTGCCATTCAACAGATTCTCATGCATGTATGTGCTGGCAAATGCATGACCAGTCCTTGGATATATTGGAAATCTTTTGAAGAGGCTGACTTTGGACCTGGCCTTCCTATTCATACAGTATTCTTCATAGCTCATGTCACAGCAAACGAATTTATTTTATCAGAAAGGTCCAAGTGGCTCACCTTTCCTGATGCATGGAGATTACTGGTAGATGTGAACCCAAGAGATGACCGTTTAGGACCTTTGGCAGCTTTTGTGTCTTCCTCTTATTTTGGTGAATCTCTTAAATCAAAATTCAAGATTAAATCACAAGGCCAGGAGTATCCACCTGGTGTGCTTATTATTCCTATGAGCAGTTTGACAGCAATGCCATTCAGAAAAACAAATTTAGTTGTCTTTGCACCTGATAATTGTTTGGATATTGTTTACCATGATTCAAAGTTTGCAGCCTATGGAGATGCTTTAATCATGGATCCTGGATGCCATTACAGAGTCCATGACCAGTTGGCAGAGATTGTCACTTCATTGCCAAGAAAGCTTGTTATATTTGTGACACATCATCATCAAGATCATGTAGATGGTCTCTCAGTTGTACAAAGGTGCAATCCTAATGTCACTCTACTAGCTCATGAAGCTACCATACGACGTATTGGAAAAGGTGCAACAGGTATCAGATGCATCAATGTGGAAGGTGGATCTACACTTTGTATTGGTGGACAAGAGTTTCAAGTTATTTTTGCACCTGGCCATACAGATGGTCACATGGCATTACTTCATGTCAGGACACATACTCTAGTCGTTGGTGATCATTGTGTAGGTCAAGGCAGTTCTGTCCTAGATGCTAATTCGGGTGGAAACATGAAGGCTTACTTGGAAACGACACATCGATTTCTTGAGCTTTCTCCACATGTTATAATTCCAATGCATGGAAAGCCAAGTCTTTGGCCTACGAAACTTCTTTGTGGATATATCAAGCATCGTAAAGAAAGAGAGACAAAAGTACTGAAAGCTATTGAAAGTGGTGCAGCAACACTATATGAAATTGTGTCCAAAGCATATACAGATGTACTTCCTGTCATGTGGGTGGGAGCTGCATTAAATGTGAAATTGCATGTTGAGCATTTAGCATACCAACAAAAACTTCCTGTGGATTTTTCTATGGACACATTCCTTACAAGTTGTGGGCACCGCTTTCAGCTGAGGTGGCTTTGGAGAATGATGCAAAATACAGCTCAGACAAATTCTTACCTCAACTATGCAGTAAAACTATCTCCCGTACTTATTATTGGTTTGACATCCTATATCTATTTTTACTTTACTAAGAAACAAAATTCCAGGTAAGTCGGGGATACTTGACTTGGAAGAGTTGATCATGAATCTTGTAATGCTTCTTGTCAGTAAGTTTGAATATGTTCAGTTGTATCAACACCTAGTGGTGCCCAACTGCTATGGTAAATGAGTCTTTTAAGAAAATAAGCATAAAACATTTCGAACACGAAAATAAGCTTGTTTGTAATAAGGCTTTTAATGGGGGCAAGTAGAAGGGACGTGGATCATGAATTGTGTACTTTTGTCTTATAATGCAAAATGGATATTGGTGCCAGGTAGAAAAAACGTTTGACCTGATATGTCTACTATCTTATAATGCAAAAATGGAAATCTTACTAAAGTGTT

Ace file of the UniGene sp_v3.0_unigene15331 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SLY7_RICCO	-	-	0.0	46%
FL-Next	tr=Catalytic, putative; Ricinus communis (Castor bean).	-	-	0.0	46%

Source	Gene names
Sma3	At1g25375; F4F7.24; GSVIVT00030374001; OSJNBa0083M16.21-1; OSJNBa0083M16.21-2; Os01g0133500; OsI_00271; OsJ_00262; PHYPADRAFT_147063; POPTRDRAFT_1090851; POPTRDRAFT_769623; RCOM_1310050; VITISV_015002;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	-
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	Protein of unknown function DUF1639	IPR012438	-	-
Sma3		IPR015706	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315930.1	predicted protein [Populus trichocarpa]	0.0	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SLY7

Fln msg:

Fln protein: MASYRIALFLKNALSSGDEFLLVRENLPSAIPVDDDEFRHPRYADSDLWDIPSAALSPHSTKTQLDPAFQTVVQDVQHALQNLELRGFDISSAIQQILMHVCAGKCMTSPWIYWKSFEEADFGPGLPIHTVFFIAHVTANEFILSERSKWLTFPDAWRLLVDVNPRDDRLGPLAAFVSSSYFGESLKSKFKIKSQGQEYPPGVLIIPMSSLTAMPFRKTNLVVFAPDNCLDIVYHDSKFAAYGDALIMDPGCHYRVHDQLAEIVTSLPRKLVIFVTHHHQDHVDGLSVVQRCNPNVTLLAHEATIRRIGKGATGIRCINVEGGSTLCIGGQEFQVIFAPGHTDGHMALLHVRTHTLVVGDHCVGQGSSVLDANSGGNMKAYLETTHRFLELSPHVIIPMHGKPSLWPTKLLCGYIKHRKERETKVLKAIESGAATLYEIVSKAYTDVLPVMWVGAALNVKLHVEHLAYQQKLPVDFSMDTFLTSCGHRFQLRWLWRMMQNTAQTNSYLNYAVKLSPVLIIGLTSYIYFYFTKKQNSR*

Protein Length: 539

Fln nts: CTGAACCTACCTACCATAAGAACAGAACAGTGCGCATTACCATTTTCCAGAAGATTTTAGCTCGGACGACCAGTGAGCCAGGTCGTGGATTCGAAC_-_ATGGCAAGCTACAGGATCGCTCTTTTTCTGAAGAATGCCTTGTCGTCTGGTGACGAATTTCTTCTTGTGCGTGAAAATCTGCCATCTGCAATTCCTGTGGATGATGATGAATTCAGGCATCCTCGCTATGCAGATTCTGATTTGTGGGATATCCCCTCCGCTGCTTTATCTCCTCATTCAACTAAAACTCAGTTGGATCCCGCCTTCCAGACAGTTGTTCAAGACGTGCAACATGCACTTCAAAACCTGGAGCTGCGCGGATTTGATATCTCCTCTGCCATTCAACAGATTCTCATGCATGTATGTGCTGGCAAATGCATGACCAGTCCTTGGATATATTGGAAATCTTTTGAAGAGGCTGACTTTGGACCTGGCCTTCCTATTCATACAGTATTCTTCATAGCTCATGTCACAGCAAACGAATTTATTTTATCAGAAAGGTCCAAGTGGCTCACCTTTCCTGATGCATGGAGATTACTGGTAGATGTGAACCCAAGAGATGACCGTTTAGGACCTTTGGCAGCTTTTGTGTCTTCCTCTTATTTTGGTGAATCTCTTAAATCAAAATTCAAGATTAAATCACAAGGCCAGGAGTATCCACCTGGTGTGCTTATTATTCCTATGAGCAGTTTGACAGCAATGCCATTCAGAAAAACAAATTTAGTTGTCTTTGCACCTGATAATTGTTTGGATATTGTTTACCATGATTCAAAGTTTGCAGCCTATGGAGATGCTTTAATCATGGATCCTGGATGCCATTACAGAGTCCATGACCAGTTGGCAGAGATTGTCACTTCATTGCCAAGAAAGCTTGTTATATTTGTGACACATCATCATCAAGATCATGTAGATGGTCTCTCAGTTGTACAAAGGTGCAATCCTAATGTCACTCTACTAGCTCATGAAGCTACCATACGACGTATTGGAAAAGGTGCAACAGGTATCAGATGCATCAATGTGGAAGGTGGATCTACACTTTGTATTGGTGGACAAGAGTTTCAAGTTATTTTTGCACCTGGCCATACAGATGGTCACATGGCATTACTTCATGTCAGGACACATACTCTAGTCGTTGGTGATCATTGTGTAGGTCAAGGCAGTTCTGTCCTAGATGCTAATTCGGGTGGAAACATGAAGGCTTACTTGGAAACGACACATCGATTTCTTGAGCTTTCTCCACATGTTATAATTCCAATGCATGGAAAGCCAAGTCTTTGGCCTACGAAACTTCTTTGTGGATATATCAAGCATCGTAAAGAAAGAGAGACAAAAGTACTGAAAGCTATTGAAAGTGGTGCAGCAACACTATATGAAATTGTGTCCAAAGCATATACAGATGTACTTCCTGTCATGTGGGTGGGAGCTGCATTAAATGTGAAATTGCATGTTGAGCATTTAGCATACCAACAAAAACTTCCTGTGGATTTTTCTATGGACACATTCCTTACAAGTTGTGGGCACCGCTTTCAGCTGAGGTGGCTTTGGAGAATGATGCAAAATACAGCTCAGACAAATTCTTACCTCAACTATGCAGTAAAACTATCTCCCGTACTTATTATTGGTTTGACATCCTATATCTATTTTTACTTTACTAAGAAACAAAATTCCAGGTAA___GTCGGGGATACTTGACTTGGAAGAGTTGATCATGAATCTTGTAATGCTTCTTGTCAGTAAGTTTGAATATGTTCAGTTGTATCAACACCTAGTGGTGCCCAACTGCTATGGTAAATGAGTCTTTTAAGAAAATAAGCATAAAACATTTCGAACACGAAAATAAGCTTGTTTGTAATAAGGCTTTTAATGGGGGCAAGTAGAAGGGACGTGGATCATGAATTGTGTACTTTTGTCTTATAATGCAAAATGGATATTGGTGCCAGGTAGAAAAAACGTTTGACCTGATATGTCTACTATCTTATAATGCAAAAATGGAAATCTTACTAAAGTGTT

Fln Alignment:

Contig15331___MASYRIALFLKNALSSGDEFLLVRENLPSAIPVDDDEFRHPRYADSDLWDIPSAALSPHSTKTQLDPAFQTVVQDVQHALQNLELRGFDISSAIQQILMHVCAGKCMTSPWIYWKSFEEADFGPGLPIHTVFFIAHVTANEFILSERSKWLTFPDAWRLLVDVNPRDDRLGPLAAFVSSSYFGESLKSKFKIKSQGQEYPPGVLIIPMSSLTAMPFRKTNLVVFAPDNCLDIVYHDSKFAAYGDALIMDPGCHYRVHDQLAEIVTSLPRKLVIFVTHHHQDHVDGLSVVQRCNPNVTLLAHEATIRRIGKGATGIRCINVEGGSTLCIGGQEFQVIFAPGHTDGHMALLHVRTHTLVVGDHCVGQGSSVLDANSGGNMKAYLETTHRFLELSPHVIIPMHGKPSLWPTKLLCGYIKHRKERETKVLKAIESGAATLYEIVSKAYTDVLPVMWVGAALNVKLHVEHLAYQQKLPVDFSMDTFLTSCGHRFQLRWLWRMMQNTAQTNSYLNYAVKLS-PVLII
B9SLY7_______________MATYNVALILKNALKEA-EFLLIKQSPPPKLGNEE----YDSFVDSDLWDLPSTKLN--LVDGELEPAI--LIDGMDSHLGKFNATKYDIESAMKRVLEQLGTKAVEVKDWSFFKFVEEPEFGPGSPIHTIYITGRLGTRNADSPKLWKWMSIQSCLNDLVDVKPNRDRIGPLVVIGVITDSLQSPRIKVDTTLHHQEYPPGVAVVPMKSRTTKPFCTTNLVIFAPQN-VSKDGEDSSFVACGDALIIDPGCLTDFHGELLKIVAALSRKLVVFVTHHHHDHVDGLSVIQKCNPDATLLAHENTMRRIKKGDWSLGYTSVAGGEDICIGGQRLKVIFAPGHTDGHVALLHVSTHSLIVGDHCVGQGSSLLDINSGGNMIDYFQSTYTFIDMAPHALIPMHGRVNLWPKHMLCAYLKNRKSREKDILKAIENGAKTLIDIVASVYSEVDPGLWIPAASNVQLHVDHLAQQNKLPKEFSLQKFRRTCRLHFFARWVWAYL-----TGGFLTGCKKLNKPKLLI

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
178		50		50	1.0
493	84		15		0.999986
498			15	84	0.999986
699	11		88		0.923564
703		12	87		0.992554
704	87	12			0.992554
705		12		87	0.992554
944	85	14			0.993533
945	14	85			0.993533
985		12		87	0.992554
1088			90	10	0.90298
1158		88	11		0.923564
1166	12		87		0.992554
1171		85		14	0.993533
1234	25		75		0.996473
1275	75		25		0.996473
1445	87		12		0.992554
1499	12			87	0.992554
1500		12	87		0.992554
1502			87	12	0.992554
1503		87		12	0.992554
1526		16		83	0.994512
1560		18		81	1.0
1685		11		88	0.923564
1695	11		88		0.923564
1696		88		11	0.923564
1697			88	11	0.923564
1780	11		88		0.923564
1812	90			10	0.90298
1839		11	88		0.923564
1953	17		82		1.0
1995			16	83	0.999991
2007	9		18	72	0.999994
2008		9	72	18	0.999994
2012	90		10		0.90298
2013			10	90	0.90298
2018		10	90		0.90298
2019		90	10		0.90298
2020	88	11			0.923564
2021	11	88			0.923564
2022	11			77	0.968132
2024			12	87	0.992554
2027	12			87	0.992554
2028		25	75		1.0
2029		12	12	75	0.975346
2030	12	12		75	0.975346
2032	12	12	12	62	0.962769
2033		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain