SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15192

Length: 3355 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene15192
ATGGGGGTCGAAGATTCATCGGTTCTTATGGGCAAGGTAGCTTGGTCGCCTTCCTCCGCTCTTCCTGTCTTTCAGCGCACCTCATCTCAGACGTGAGGCGATCGAATTGTCTGTTAATCAAATCGAAACGCTACATTGGCACTTTCCCAATCACATTCAACATATTTGGCACTGGATATCAAATACGCTTTTAGCAGTTCGTGGAATCCGTTATCATTATAATTACTACTCCTACTCTTGTGTGTGAAGGGAAGGGAAGCTATCCCTGACAGGGTTCAGACGCACCAATTTCTAGCGCATCTACGGTTTCCACGATGCAGGAAAGGAACACTGGAGTTAAGACGGGGAAAACGGGGAAGGTCACAACATCTTCCAAAGCTTCATCAGCCAGCTCCCTCCCACTTCTGCTAGACATTGAAGATTTTAAGGGTGAATTCTCATTTGATGACTTATTTGGGAGCTTGGTGAATGAATTACTGCCATCGTTTCAAGAGGACGATACTGAATCTTCAGAGGGAAGAGGCAGCATAGGAGGCCAGGATGTCGGTTCTAATGGCCATATCCGTTTCCCTGCAGAAGCAACAAAAACAAATTCATCATCAGGTCCTCCTGTATTTTCTGATGCGGAATCCCTTTTGTCACTTTTCAAGGATTGTCGGAGGGAGTTGGTGGACCTTAGTCACCAGATTGATGCAAGATTGAGCAATCTTAAGAAGGAAGTTGCTCTTCAAGATTCTAAGCATCGGAAAACACTGTCTGAGCTGGAGAAGGGAGTTGATGCCCTATTTGAGAGTTTTAACAGGCTAGATTCTCGCATCTCAGGTGTAGGGCAGACTGCCGCAAAGATTGGTGACCATTTACAGAGTGCGGATTCACAGAGGGAAACTGCTAGTCAAACGATAGAACTCATAAGGTACCTTATGGAGTTCAATAGTAGTCCAGGCGATCTGATGGAACTCTCACCTCTCTTTTCTGATGATAGTCGAGTTGCTGAGGCTGCAGCAATTGCACAAAAACTGCGCTCCTTTGCTGAAGAAGATGTGGGAAGACAAGGAATGGCTGCTGCATCTATCAGGGGTACTTCAAATGCTAGCAGGGGCCTAGAAGTTGCTGTGGCTAACCTACAGGATTATTGTAATGAATTAGAGAACAGACTCTTGTCTCGCTTTGATGCTGCTTCTCAACGACGGGAATTGTCAACAATGGCAGAGTGTGCTAAGATATTGTCTCAGTTTAATAGAGGGACAAGTGCCATGCAGCGGTATGTAGCTTCACGTCCGATGTTTATTGATGTCGATATTATGAACGCAGATGCAAAGATGGTTCTTGGAGATCAGGGGATACAGTCAGGCCCCACCAATGTGGCACGTGGGCTTTCAACATTGTACAAAGAAATCATAGAAACTGTCCGAAAGGAAGCTGCAACTATTATGGCTGTCTTTCCTTCTCCAGATGCAGTTATGTCGATCCTTGTGCAGCGAGTTTTGGAGCAGAGGGTTTCTGCAGTGTTGGATAAGTTTTTACCAAAACCCTCACTTGCAAACCCACCACCTATGGAAGAAGGTGGCCTTTTATTGTATCTTAGAATTCTGGCAGTGGCATATGAGAAGACGCAGGAACTAGCTAAAGAATTGCGGTTATTAGGATGTGGTGACTTAGATGTTGAAGGGCTTGCAGAGTCTCTGTTTTCTACACACCAGGATGAATATCCAGAGCATGAACAGTGTTCATTAAACCAATTATTTCAATCTAAGATGGCAGAGCTGCGTTCTGGAGCACAACAACCATCTGAAGTGTCTGGTACATTGTCACGTGGTAAATCTTCTTCCACTGCCTTTGCACACCAACAGATGTCAGTGAGTATTGTGACTGAGTTTGTTCGTTGGAATGAGGAGGCAGTTAGTCGCTGCAATCTGTTGTCCCCCAATCCTGCTGCTCTGGCAAATAATGTGAAAGCAGTCTTCACATGCCTGCTGGATCAAGTCAGCCAGTATACCACAGAAGGGTTGGAAAGGACCAGAGAAGCTCTGAATGATGCTGCAGCTTTAAGAGAGCGGTTTGTTATTGGTTCAAGTGTCAGCAGAAGAGTGGCTGCAGCTGCTGCTTCTGCGGCAGAGGCTGCTGCAGCAGCAGGTGAAACCAGTTTTAGGTCGTTCATGGTTGCAGTTCAACGTGCCACCAGCAATGTTGCTATGGTCCAGCAACATTTTGGGAACACTATTTCAAGATTGTTATTACCTGTTGATGGTGCTCATGCTGCATGCTGTGAAGAAATGTCATCGGCAATGTCAAGTGCTGAGAGTGCTGCTTTGAGAGGGCTTCAACAATGTATTGACACTGTCATGGCAGAGGTGGATCGTCTTCTGGCTGCTGAGCAGAAGTCAACTGATTATCGGTCTCCAGATGATGGAAATACCCCAGACCATCGTCCAACAGTTGCTTGTACTCGTGTTGTGGCATACCTGGCCCGTATTCTCGAAGCAGCAAATACTGCTTTAGAAGGCCTCAACAAACAAGCATTTATGACAGAATTGGGAAATCGCTTGCATAAAGGCCTACTCAATCATTGGCAACGATTCACATTCAGTCCTAGTGGGGGTTTACGATTGAAGCGTGACATTACAGAGTACACAGAGTTTGTGCATAGATTCAATGCACCTGCAGTTGATGAAAAGTTTGAATTACTGGGAATCCTGGCAAATGTATTTATTGTTGCCCCAGAAAGCCTTACCACTTTGTTTGAAGGTAGCCCAAGTATTCGCAAAGATGCTTTAAGGTTTATTCAGCTGCGAGATGATTACAAAACTGCCAAAATAGCAAGCAGACTAAGTTCATTGACGATAGAATAACATGTTTGCATGTGAAGGTCATTAAATTTTAATGTAATAAACGTATGCAGCTGATCCTTTTTTGTAGATTGCAAGTTGCTATCCAAAAACACATTTTGTAGCGCTTCTCTACATTCATATATGCATATAGGTCCCTGTATATTGATATTTGTACTTCTGATTCTCATCATCCAAATTTTCTATGCTTCTCTGAATGTCTGAATTGGCAGTAGTATTTACTAGGAGAAACTAAATAATTAACATTTGTTATGATGATCAGAGTGTCAGTGATGTCTATCTGAGTGCAAGTACCTCCTTTTTTCGTCATCTTGAAACCAATATATGAACAAACTATCTAGCAGTCTTGTAAGAAATGGAAGTTGGAATAGTTCCAACATCCAGGTTTGGACTGACATATTTACTGATACAGAATTGCAGATTTCTATCTGCGCGGCTGAAGAGGAATATGTTGCATTGTACCTTTCATTTTTGTTGAAAATCCATTTATTAAATTGTTTTATATGCCG

Ace file of the UniGene sp_v3.0_unigene15192 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	exocyst complex component 5 [Arabidopsis thaliana] ref\|NP_568270.3\| exocyst complex component 5 [Arabidopsis thaliana] sp\|Q8RVQ5.2\|EXOC5_ARATH RecName: Full=Exocyst complex component 5; AltName: Full=Exocyst complex component Sec10 dbj\|BAD95324.1\| putativ	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Chromosome chr15 scaffold_40, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00026901001;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	exocytosis	GO:0006887	Biological Process	-
Sma3	vesicle docking	GO:0048278	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Exocyst complex component Sec10	IPR009976	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G12370.1	SEC10 exocyst complex component sec10 chr5:4003002-4008445 REVERSE LENGTH=825	73%
RefSeq	Arabidopsis thaliana	NP_001031871.1	exocyst complex component 5 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002301373.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAU1

Fln msg: your sequence is longer than subject: 845 - 230

Fln protein: MQERNTGVKTGKTGKVTTSSKASSASSLPLLLDIEDFKGEFSFDDLFGSLVNELLPSFQEDDTESSEGRGSIGGQDVGSNGHIRFPAEATKTNSSSGPPVFSDAESLLSLFKDCRRELVDLSHQIDARLSNLKKEVALQDSKHRKTLSELEKGVDALFESFNRLDSRISGVGQTAAKIGDHLQSADSQRETASQTIELIRYLMEFNSSPGDLMELSPLFSDDSRVAEAAAIAQKLRSFAEEDVGRQGMAAASIRGTSNASRGLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMAECAKILSQFNRGTSAMQRYVASRPMFIDVDIMNADAKMVLGDQGIQSGPTNVARGLSTLYKEIIETVRKEAATIMAVFPSPDAVMSILVQRVLEQRVSAVLDKFLPKPSLANPPPMEEGGLLLYLRILAVAYEKTQELAKELRLLGCGDLDVEGLAESLFSTHQDEYPEHEQCSLNQLFQSKMAELRSGAQQPSEVSGTLSRGKSSSTAFAHQQMSVSIVTEFVRWNEEAVSRCNLLSPNPAALANNVKAVFTCLLDQVSQYTTEGLERTREALNDAAALRERFVIGSSVSRRVAAAAASAAEAAAAAGETSFRSFMVAVQRATSNVAMVQQHFGNTISRLLLPVDGAHAACCEEMSSAMSSAESAALRGLQQCIDTVMAEVDRLLAAEQKSTDYRSPDDGNTPDHRPTVACTRVVAYLARILEAANTALEGLNKQAFMTELGNRLHKGLLNHWQRFTFSPSGGLRLKRDITEYTEFVHRFNAPAVDEKFELLGILANVFIVAPESLTTLFEGSPSIRKDALRFIQLRDDYKTAKIASRLSSLTIE*

Protein Length: 846

Fln nts: ATGGGGGTCGAAGATTCATCGGTTCTTATGGGCAAGGTAGCTTGGTCGCCTTCCTCCGCTCTTCCTGTCTTTCAGCGCACCTCATCTCAGACGTGAGGCGATCGAATTGTCTGTTAATCAAATCGAAACGCTACATTGGCACTTTCCCAATCACATTCAACATATTTGGCACTGGATATCAAATACGCTTTTAGCAGTTCGTGGAATCCGTTATCATTATAATTACTACTCCTACTCTTGTGTGTGAAGGGAAGGGAAGCTATCCCTGACAGGGTTCAGACGCACCAATTTCTAGCGCATCTACGGTTTCCACG_-_ATGCAGGAAAGGAACACTGGAGTTAAGACGGGGAAAACGGGGAAGGTCACAACATCTTCCAAAGCTTCATCAGCCAGCTCCCTCCCACTTCTGCTAGACATTGAAGATTTTAAGGGTGAATTCTCATTTGATGACTTATTTGGGAGCTTGGTGAATGAATTACTGCCATCGTTTCAAGAGGACGATACTGAATCTTCAGAGGGAAGAGGCAGCATAGGAGGCCAGGATGTCGGTTCTAATGGCCATATCCGTTTCCCTGCAGAAGCAACAAAAACAAATTCATCATCAGGTCCTCCTGTATTTTCTGATGCGGAATCCCTTTTGTCACTTTTCAAGGATTGTCGGAGGGAGTTGGTGGACCTTAGTCACCAGATTGATGCAAGATTGAGCAATCTTAAGAAGGAAGTTGCTCTTCAAGATTCTAAGCATCGGAAAACACTGTCTGAGCTGGAGAAGGGAGTTGATGCCCTATTTGAGAGTTTTAACAGGCTAGATTCTCGCATCTCAGGTGTAGGGCAGACTGCCGCAAAGATTGGTGACCATTTACAGAGTGCGGATTCACAGAGGGAAACTGCTAGTCAAACGATAGAACTCATAAGGTACCTTATGGAGTTCAATAGTAGTCCAGGCGATCTGATGGAACTCTCACCTCTCTTTTCTGATGATAGTCGAGTTGCTGAGGCTGCAGCAATTGCACAAAAACTGCGCTCCTTTGCTGAAGAAGATGTGGGAAGACAAGGAATGGCTGCTGCATCTATCAGGGGTACTTCAAATGCTAGCAGGGGCCTAGAAGTTGCTGTGGCTAACCTACAGGATTATTGTAATGAATTAGAGAACAGACTCTTGTCTCGCTTTGATGCTGCTTCTCAACGACGGGAATTGTCAACAATGGCAGAGTGTGCTAAGATATTGTCTCAGTTTAATAGAGGGACAAGTGCCATGCAGCGGTATGTAGCTTCACGTCCGATGTTTATTGATGTCGATATTATGAACGCAGATGCAAAGATGGTTCTTGGAGATCAGGGGATACAGTCAGGCCCCACCAATGTGGCACGTGGGCTTTCAACATTGTACAAAGAAATCATAGAAACTGTCCGAAAGGAAGCTGCAACTATTATGGCTGTCTTTCCTTCTCCAGATGCAGTTATGTCGATCCTTGTGCAGCGAGTTTTGGAGCAGAGGGTTTCTGCAGTGTTGGATAAGTTTTTACCAAAACCCTCACTTGCAAACCCACCACCTATGGAAGAAGGTGGCCTTTTATTGTATCTTAGAATTCTGGCAGTGGCATATGAGAAGACGCAGGAACTAGCTAAAGAATTGCGGTTATTAGGATGTGGTGACTTAGATGTTGAAGGGCTTGCAGAGTCTCTGTTTTCTACACACCAGGATGAATATCCAGAGCATGAACAGTGTTCATTAAACCAATTATTTCAATCTAAGATGGCAGAGCTGCGTTCTGGAGCACAACAACCATCTGAAGTGTCTGGTACATTGTCACGTGGTAAATCTTCTTCCACTGCCTTTGCACACCAACAGATGTCAGTGAGTATTGTGACTGAGTTTGTTCGTTGGAATGAGGAGGCAGTTAGTCGCTGCAATCTGTTGTCCCCCAATCCTGCTGCTCTGGCAAATAATGTGAAAGCAGTCTTCACATGCCTGCTGGATCAAGTCAGCCAGTATACCACAGAAGGGTTGGAAAGGACCAGAGAAGCTCTGAATGATGCTGCAGCTTTAAGAGAGCGGTTTGTTATTGGTTCAAGTGTCAGCAGAAGAGTGGCTGCAGCTGCTGCTTCTGCGGCAGAGGCTGCTGCAGCAGCAGGTGAAACCAGTTTTAGGTCGTTCATGGTTGCAGTTCAACGTGCCACCAGCAATGTTGCTATGGTCCAGCAACATTTTGGGAACACTATTTCAAGATTGTTATTACCTGTTGATGGTGCTCATGCTGCATGCTGTGAAGAAATGTCATCGGCAATGTCAAGTGCTGAGAGTGCTGCTTTGAGAGGGCTTCAACAATGTATTGACACTGTCATGGCAGAGGTGGATCGTCTTCTGGCTGCTGAGCAGAAGTCAACTGATTATCGGTCTCCAGATGATGGAAATACCCCAGACCATCGTCCAACAGTTGCTTGTACTCGTGTTGTGGCATACCTGGCCCGTATTCTCGAAGCAGCAAATACTGCTTTAGAAGGCCTCAACAAACAAGCATTTATGACAGAATTGGGAAATCGCTTGCATAAAGGCCTACTCAATCATTGGCAACGATTCACATTCAGTCCTAGTGGGGGTTTACGATTGAAGCGTGACATTACAGAGTACACAGAGTTTGTGCATAGATTCAATGCACCTGCAGTTGATGAAAAGTTTGAATTACTGGGAATCCTGGCAAATGTATTTATTGTTGCCCCAGAAAGCCTTACCACTTTGTTTGAAGGTAGCCCAAGTATTCGCAAAGATGCTTTAAGGTTTATTCAGCTGCGAGATGATTACAAAACTGCCAAAATAGCAAGCAGACTAAGTTCATTGACGATAGAATAA___CATGTTTGCATGTGAAGGTCATTAAATTTTAATGTAATAAACGTATGCAGCTGATCCTTTTTTGTAGATTGCAAGTTGCTATCCAAAAACACATTTTGTAGCGCTTCTCTACATTCATATATGCATATAGGTCCCTGTATATTGATATTTGTACTTCTGATTCTCATCATCCAAATTTTCTATGCTTCTCTGAATGTCTGAATTGGCAGTAGTATTTACTAGGAGAAACTAAATAATTAACATTTGTTATGATGATCAGAGTGTCAGTGATGTCTATCTGAGTGCAAGTACCTCCTTTTTTCGTCATCTTGAAACCAATATATGAACAAACTATCTAGCAGTCTTGTAAGAAATGGAAGTTGGAATAGTTCCAACATCCAGGTTTGGACTGACATATTTACTGATACAGAATTGCAGATTTCTATCTGCGCGGCTGAAGAGGAATATGTTGCATTGTACCTTTCATTTTTGTTGAAAATCCATTTATTAAATTGTTTTATATGCCG

Fln Alignment:

Contig15192___MVAVQRATSNVAMVQQHFGNTISRLLLPVDGAHXXXXXXXXXXXXXXXXXALRGLQQCIDTVMAEVDRLLAAEQKSTDYRSPDDGNTPDHRPTVACTRVVAYLARILEAANTALEGLNKQAFMTELGNRLHKGLLNHWQRFTFSPSGGLRLKRDITEYTEFVHRFNAPAVDEKFELLGILANVFIVAPESLTTLFEGSPSIRKDALRFIQLRDDYKTAKIASRLSSLTIE
D5AAU1_______________MVAVQRATSNVAMVQQHFGNTISRLLLPVDGAHAACCEEMSSAMSSAESAALRGLEQCIDTIMAEVDRLLAAEQKATDYRSPDDGNTPDHRPTVACTRVVAYLARILEAANSALEGLNKQAFMTELGNRLHKGLLNHWQRFTFSPSGGLRLKRDITEYTEFVRRFNAPAVDEKFELLGILANVFIVAPESLPTLFEGSPSIRKDALRFIQLRDDYKTAKIASRLSSLMIE

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
123	83			16	0.994512
124	83			16	0.994512
140		20		80	0.995493
1787		11	88		0.923564
1788	11		88		0.923564
1789		88		11	0.923564
1790		88		11	0.923564
1834	85			14	0.993533
1853		88		11	0.923564
1861		88		11	0.923564
1863		88		11	0.923564
1987	14	85			0.993533
2077	14		85		0.993533
2078			85	14	0.993533
2079	14		71	14	0.984337
2211			25	75	0.996473
2357		88		11	0.923564
2517	44		55		1.0
2537	88		11		0.923564
2604		14		85	0.993533
2606	14		14	71	0.984337
2649		14	85		0.993533
2687	57		42		1.0
2755	20	80			0.995493
2757			80	20	0.995493
2808	10		90		0.90298
3247	12		87		0.992554
3304		16	83		0.994512
3305		16	83		0.994512
3306	83	16			0.994512
3308			85	14	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain