SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15154

Length: 1150 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15154

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] emb\|CAB88990.1\| putative protein [Arabidopsis thaliana] gb\|AAT41789.1\| At3g44220 [Arabidopsis thaliana] gb\|AAT70476.1\| At3g44220 [Arabidopsis thaliana] gb\|AEE77877.1\| late	-	-	6.0e-32	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	VAMP protein SEC22	-	-	3.924e-20	-

Source	Gene names
Sma3	At3g44220; GSVIVT00021516001; GSVIVT00037274001; H0723C07.1; H0913C04.12; LOC_Os11g05860; LOC_Os12g06260; NHL1; OSJNBa0088H09.16; Os04g0685400; Os11g0157200; Os12g0159600; OsI_17994; OsI_35187; OsI_37550; OsJ_35298; T10D17_10; VITISV_023904; VITISV_027779

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR010847	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G44220.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family chr3:15928216-15929645 FORWARD LENGTH=206	2.0e-39	45%
RefSeq	Arabidopsis thaliana	NP_190008.1	late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana]	3.0e-39	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ42

Fln msg:

Fln protein: MSKGCVTHKDCGRHGHWWEEMPYRRFLRALLALLFIVLFVILVIFLALHPHRPRFYLQNATVSVLNVSDGLLTSSLQFTVVSRNPNDRIGVIYDSLSTYASYLDEQITAEFPLAPFYQDPKDITVLALILYGNSVSLAPVVVEQLSYESQKGSLSLSLRMNGRVRWKVGSWRSGHYHLYVNCEAIVWLSNNGIGGQVPPQPITTCHVEV*

Protein Length: 211

Fln nts: ATTGACGCCAAGCGTCAGAACTGGTAACGCTCTGAGCATTACAGTGCTCATTTGGGGCTTTTCCAGTGATTTGTGGTCAGAATTTTGCATTGGGGACCGAGCAGAAAAATCCAGCC_-_ATGTCCAAGGGATGTGTGACTCACAAGGATTGCGGCCGCCATGGCCACTGGTGGGAAGAGATGCCCTACAGAAGATTCCTGCGGGCTCTGTTGGCGTTGCTCTTCATCGTGCTGTTCGTGATCCTCGTCATCTTCTTAGCGCTGCATCCGCACAGGCCACGGTTTTACCTGCAGAACGCTACGGTCAGCGTGCTGAATGTGAGCGACGGATTGCTCACTTCCAGCCTACAGTTCACCGTGGTGTCGCGCAACCCGAATGACAGGATCGGTGTCATCTACGACAGCCTGAGCACCTACGCCTCGTATCTGGATGAGCAGATCACGGCCGAGTTCCCGTTGGCCCCTTTCTACCAGGACCCCAAGGATATCACCGTCTTGGCTCTCATTTTATATGGGAATTCCGTTTCCTTGGCTCCCGTCGTTGTTGAGCAGCTGAGTTACGAGAGCCAGAAAGGGTCGTTGAGCTTGAGTCTGAGAATGAACGGAAGGGTCCGCTGGAAGGTGGGCAGCTGGAGATCCGGGCATTATCATTTGTATGTCAATTGCGAAGCCATCGTGTGGCTGAGCAATAACGGCATTGGAGGCCAAGTTCCTCCGCAACCCATCACCACATGCCATGTGGAGGTCTAG___GTTTCAGTTAGGAGATTTTGCAATCTATCAGAGTTCCATGGTAATTTAATTCCCCGGTATTCATAGTCAGTCTGCTTCTGGTTTTATTTGTATAATTCCTTCCCCATTCGACTGCCCTGTTGTTTGTGTGAAGCTCTGGATCTGGTGCGCGGGAATGTTAGTCCCACATTGCGATGGGAGGGACCTTTGTTGTATAAGTTTTCCTCTAAGACATGCCATTATGTTAGGGATGGCAATTTTAATAATAGCGTAGGGACCTTTGTCTGTATAAGTTTTCCTCTAAGACATGCCCTTATGTTAGGGATGGCATTTTTAATAATAGCGTTTATTATTGTGGGCAACTTATGCTATGGATTCATAATTGATATATAAATATGTGGGGGTAGTATATGTTTATCGACATT

Fln Alignment:

Contig15154___KGCVTHKDCGRHGHWWEEMPYXXXXXXXXXXXXXXXXXXXXXXXXXHPHRPRFYLQNATVSVLNVSDGLLTSSLQFTVVSRNPNDRIGVIYDSLSTYASYLDEQITAEFPLAPFYQDPKDITVLALILYGNSVSLAPVVVEQLSYESQKGSLSLSLRMNGRVRWKVGSWRSGHYHLYVNCEAIVWLSNNGIGGQVPPQPITTCHVEV
A9NQ42_______________KGCVTRNDCGRHGSYCEEWRFRRFLQVLLAFLLIVLFVILVIFLALHPHKPRFYLQNATVRELNVSDGLLTSSLQFTVLSHNPNDRIGVLYDSLSIYASYLGQQITDEYRLPHFYQDDNDFNVLNPVLCGNSVPLAAVVCEHLNSERQNGLLSLSLRMDGRIRWKVGTWTSGHYHLNVNCWTISGMGNNDFGGQVPIQQDTRCHVEV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
763	66		33		1.0
803		83		16	0.994512
839	25			75	0.996473
903	80	20			0.995493
970	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain