SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15068

Length: 2355 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene15068
CGTCGTGACCTTGGCTGTCACTCATTTTTTTATTTGGTCTCTTCGTCTTCTTTCCTTGTAACTTCTCGCTTCTCCGAGTTCACCTTTTATTTTAACTGGCTCTGCGTTTCTTCTGATCGGTCTGCCTCTAAATTTGGCGGAGATATTCGCCTCCAATTTGGTACGCTTTGCAGGAAGAAGAAGAACCGGGGAGAAAATGCAGGCTATTGCAGGAAGCAAAGTTTTCTCGCCTTTGGATGGGCGCAATCGAGTCCAGGGATGTAGAACCTTTTGCAGCGGATCATCGGCCAGGCCACTAAATTTGGCGGTGACAGAGGGACCTTCGGCTAAAATTTCGACGGGCGCAGTTGGTTTGAAATCTTCAGTGTGGGGATCACGAAAGATATGCATGGAAAAGAGAATAAATTTGGGCTTGACGAACAAGCGTGGCGGTTCTTCTAAATTTCGGGCCAAAGCTTACGATGGCAATTTGGAGTCTCAGACAGCATCTGGAAAATCTAAATCTTCTGGTACAGTATTGCCATATGTTGGTGTTGCATGTTTGGGAGCCATTTTATTTGGTTACCATCTTGGTGTAGTAAATGGAGCACTTGAATATCTTGCAAGGGATCTTGGAATTGCTGACAATACTGTTTTACAAGGATGGGTGGTTAGCACAACACTTGCAGGTGCCACTGTTGGATCGTTTACTGGAGGTGCATTGGCTGATAAACTTGGCAGGAAGAGGTCATTTCAACTTGATGCCATACCTCTTGTAGTTGGTGCTATTCTAAGTGCCACAGCACAAAGTGTGCAAGCAATGATTATTGGTCGGTTGCTTGCTGGTATTGGTATTGGCATCTCTTCCTCTTTGGTGCCACTTTATATTTCAGAGATATCACCCACTGAGATCCGGGGTGCTCTTGGGTCTGTGAATCAACTTTTCATTTGTGTTGGAATATTGCTTGCTCTAGTGGCAGGATTACCCTTGGCTGGAAATCCATTATGGTGGCGGAACATGTTCACCATTGCTACTGTGCCTGCAGTACTAATGGCACTGGGAATGTTATTTTCCCCTGAAAGTCCTCGTTGGCTTTTCAAGCAAGGCAAAGTAGTTGAAGCTGAATCAGCGATAAAGACCCTGTGGGGCAAGGGCAAAGTTGAAGAAGTTATGATTGAATTGAGAGCAAGTAGCTCAGGTTCTGTAGAGGAGGATGCTGGTTGGTTAGATCTTTTCAGTAAACGTTACTGGAAAGTGGTCAGTGTTGGAGCAGCACTTTTCCTGTTTCAGCAACTTGCTGGCATAAATGCGGTTGTTTATTACTCCACTAATGTGTTTCGGAGTGCCGGTATTGCTTCTGATGTTGCAGCAAGTGCTCTTGTGGGGGCTTCAAATGTCATTGGTACAGCTGTGGCATCTTCTTTAATGGACAAGCAGGGAAGGAAGAGCTTGCTTATAACGAGTTTTTCGGGGATGGCTGCTTCTATGTTGCTGCTTTCTCTGTCCCTTTCCTGGAACGCATTGGCACGATACTCGGGCATTCTTGCTGTTCTCGGGACTGTCTTGTACGTCGTTTCATTTTCCTTGGGAGCTGGTCCTGTACCAGCTTTACTTCTACCTGAGATTTTTGCGTCACGCATCCGTGCCAAGGCTGTTTCTCTGTCTCTTGGAATGCACTGGGTTTCAAACTTCATTATTGGTCTATATTTCCTCAGTGTTTGTAATAAGTTTGGAATCAGCAAAGTTTATTTAGGATTTGCTACTGTCTGCCTCCTTGCTGTCATCTATGTGGCGAATAATGTAGTGGAAACTAAAGGTCGCTCACTGGAGGAGATTGAGCGTGCCCTCAGTGCTGCAACTTAGGTTATGCGGGGAAGACCTATAGTCTTATGAAGGGTGATAGAGAATTAGAGACACTGGCAGTGTTCCACAGATTTAAAATTGCTACCAGTGGGTAAGAGGGTCATTGTGTAGGGTGATTTGAGCAGGTTTAGTCTGCAGTAACCACCAGTGTAGTTCAGGGAGTTGCTTGAATAAGGGGCAAGTTCCCCACGAGTGTATCGGTTGCATGCAGCCTGATTTTGACAATGGTACAATGTAAACACGGGAGCATATGTTAGCTCTGAATTCCGCTTTACCAAATGAGGGAGTTTAAACATTTAAAATGACATCGGAAAAGAAGCTTATTGTATCCATCATGGATTTTAGAGTAAATGATAAATCCCTCCAGAAATCAAGATTCATATTTTATGCTGGATGTAGAAGTCTCTGTTTTTAATGAAGTTTTGCCTCCTTAATTGCTAAAAGCCTAACACTGAATGTAATATATAGGTGAATGAAATCTTTCAAAATAAATCCGAAAAAGTTTGAAATGG

Ace file of the UniGene sp_v3.0_unigene15068 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Plastid hexose transporter n=1 Tax=Vitis vinifera RepID=Q539E7_VITVI	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G16150.1	GLT1, PGLCT plastidic GLC translocator chr5:5272904-5275678 FORWARD LENGTH=546	77%
RefSeq	Arabidopsis thaliana	NP_974787.1	Plastidic glucose transporter 4 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002329294.1	predicted protein, partial [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMN4

Fln msg:

Fln protein: MQAIAGSKVFSPLDGRNRVQGCRTFCSGSSARPLNLAVTEGPSAKISTGAVGLKSSVWGSRKICMEKRINLGLTNKRGGSSKFRAKAYDGNLESQTASGKSKSSGTVLPYVGVACLGAILFGYHLGVVNGALEYLARDLGIADNTVLQGWVVSTTLAGATVGSFTGGALADKLGRKRSFQLDAIPLVVGAILSATAQSVQAMIIGRLLAGIGIGISSSLVPLYISEISPTEIRGALGSVNQLFICVGILLALVAGLPLAGNPLWWRNMFTIATVPAVLMALGMLFSPESPRWLFKQGKVVEAESAIKTLWGKGKVEEVMIELRASSSGSVEEDAGWLDLFSKRYWKVVSVGAALFLFQQLAGINAVVYYSTNVFRSAGIASDVAASALVGASNVIGTAVASSLMDKQGRKSLLITSFSGMAASMLLLSLSLSWNALARYSGILAVLGTVLYVVSFSLGAGPVPALLLPEIFASRIRAKAVSLSLGMHWVSNFIIGLYFLSVCNKFGISKVYLGFATVCLLAVIYVANNVVETKGRSLEEIERALSAAT*

Protein Length: 550

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTATTTGGTCTCTTCGTCTTCTTTCCTTGTAACTTCTCGCTTCTCCGAGTTCACCTTTTATTTTAACTGGCTCTGCGTTTCTTCTGATCGGTCTGCCTCTAAATTTGGCGGAGATATTCGCCTCCAATTTGGTACGCTTTGCAGGAAGAAGAAGAACCGGGGAGAAA_-_ATGCAGGCTATTGCAGGAAGCAAAGTTTTCTCGCCTTTGGATGGGCGCAATCGAGTCCAGGGATGTAGAACCTTTTGCAGCGGATCATCGGCCAGGCCACTAAATTTGGCGGTGACAGAGGGACCTTCGGCTAAAATTTCGACGGGCGCAGTTGGTTTGAAATCTTCAGTGTGGGGATCACGAAAGATATGCATGGAAAAGAGAATAAATTTGGGCTTGACGAACAAGCGTGGCGGTTCTTCTAAATTTCGGGCCAAAGCTTACGATGGCAATTTGGAGTCTCAGACAGCATCTGGAAAATCTAAATCTTCTGGTACAGTATTGCCATATGTTGGTGTTGCATGTTTGGGAGCCATTTTATTTGGTTACCATCTTGGTGTAGTAAATGGAGCACTTGAATATCTTGCAAGGGATCTTGGAATTGCTGACAATACTGTTTTACAAGGATGGGTGGTTAGCACAACACTTGCAGGTGCCACTGTTGGATCGTTTACTGGAGGTGCATTGGCTGATAAACTTGGCAGGAAGAGGTCATTTCAACTTGATGCCATACCTCTTGTAGTTGGTGCTATTCTAAGTGCCACAGCACAAAGTGTGCAAGCAATGATTATTGGTCGGTTGCTTGCTGGTATTGGTATTGGCATCTCTTCCTCTTTGGTGCCACTTTATATTTCAGAGATATCACCCACTGAGATCCGGGGTGCTCTTGGGTCTGTGAATCAACTTTTCATTTGTGTTGGAATATTGCTTGCTCTAGTGGCAGGATTACCCTTGGCTGGAAATCCATTATGGTGGCGGAACATGTTCACCATTGCTACTGTGCCTGCAGTACTAATGGCACTGGGAATGTTATTTTCCCCTGAAAGTCCTCGTTGGCTTTTCAAGCAAGGCAAAGTAGTTGAAGCTGAATCAGCGATAAAGACCCTGTGGGGCAAGGGCAAAGTTGAAGAAGTTATGATTGAATTGAGAGCAAGTAGCTCAGGTTCTGTAGAGGAGGATGCTGGTTGGTTAGATCTTTTCAGTAAACGTTACTGGAAAGTGGTCAGTGTTGGAGCAGCACTTTTCCTGTTTCAGCAACTTGCTGGCATAAATGCGGTTGTTTATTACTCCACTAATGTGTTTCGGAGTGCCGGTATTGCTTCTGATGTTGCAGCAAGTGCTCTTGTGGGGGCTTCAAATGTCATTGGTACAGCTGTGGCATCTTCTTTAATGGACAAGCAGGGAAGGAAGAGCTTGCTTATAACGAGTTTTTCGGGGATGGCTGCTTCTATGTTGCTGCTTTCTCTGTCCCTTTCCTGGAACGCATTGGCACGATACTCGGGCATTCTTGCTGTTCTCGGGACTGTCTTGTACGTCGTTTCATTTTCCTTGGGAGCTGGTCCTGTACCAGCTTTACTTCTACCTGAGATTTTTGCGTCACGCATCCGTGCCAAGGCTGTTTCTCTGTCTCTTGGAATGCACTGGGTTTCAAACTTCATTATTGGTCTATATTTCCTCAGTGTTTGTAATAAGTTTGGAATCAGCAAAGTTTATTTAGGATTTGCTACTGTCTGCCTCCTTGCTGTCATCTATGTGGCGAATAATGTAGTGGAAACTAAAGGTCGCTCACTGGAGGAGATTGAGCGTGCCCTCAGTGCTGCAACTTAG___GTTATGCGGGGAAGACCTATAGTCTTATGAAGGGTGATAGAGAATTAGAGACACTGGCAGTGTTCCACAGATTTAAAATTGCTACCAGTGGGTAAGAGGGTCATTGTGTAGGGTGATTTGAGCAGGTTTAGTCTGCAGTAACCACCAGTGTAGTTCAGGGAGTTGCTTGAATAAGGGGCAAGTTCCCCACGAGTGTATCGGTTGCATGCAGCCTGATTTTGACAATGGTACAATGTAAACACGGGAGCATATGTTAGCTCTGAATTCCGCTTTACCAAATGAGGGAGTTTAAACATTTAAAATGACATCGGAAAAGAAGCTTATTGTATCCATCATGGATTTTAGAGTAAATGATAAATCCCTCCAGAAATCAAGATTCATATTTTATGCTGGATGTAGAAGTCTCTGTTTTTAATGAAGTTTTGCCTCCTTAATTGCTAAAAGCCTAACACTGAATGTAATATATAGGTGAATGAAATCTTTCAAAATAAATCCGAAAAAGTTTGAAATGG

Fln Alignment:

Contig15068___MQAIAGSKVFSPLDGRNRVQGCRTFCSGSSARPLNLAVTEGPSAKISTGAVGLKSSVWGSRKICMEKRINLGLTNKRGGSSKFRAKAYDGNLESQ-TASGKSKSSGTVLPYVGVACLGAILFGYHLGVVNGALEYLARDLGIADNTVLQGWVVSTTLAGATVGSFTGGALADKLGRKRSFQLDAIPLVVGAILSATAQSVQAMXXXXXXXXXXXXXXXXLVPLYISEISPTEIRGALGSVNQLFICXXXXXXXXXXXXXXXXXLWWRNMFTIATVPAVLMALGMLFSPESPRWLFKQGKVVEAESAIKTLWGKGKVEEVMIELRASSSGSVEEDAGWLDLFSKRYWKVVSVGAALFLFQQLAGINAVVYYSTNVFRSAGIASDVAASALVGASNVIGTAVASSLMDKQGRKSLLITXXXXXXXXXXXXXXXXXXXXXARYSGILAVLGTVLYVVSFSXXXXXXXXXXXPEIFASRIRAKAVSLSLGMHWVSNFIIGLYFLSVCNKFGISKVYLGFATVCLLAVIYVANNVVETKGRSLEEIERALSAAT
B8LMN4_______________MQAIAGSKIFSPLEGRNRVQGWRTFCSGSLTRPLNLSVTEGPSAKILKGAVSLNSSVWGSRQICMEKRMNLGLTNKRGGSSKIRAKAYDGNLESQSTASGKSSSSGTVLPYVGVACLGAILFGYHLGVVNGALEYLAKDLGFADNTVLQGWVVSTTLAGATVGSFTGGALADKLGRKRTFQLDAIPLVIGPFLSATAQSVQAMIIGRLLAGIGIGISSALVPLYISEISPTDIRGALGSVNQLFICVGILLALVAGLPLAANPLWWRSMFTIATVPAVLMALGMLFSPESPRWLFKQGRIVEAESAIKTLWGKGKVEEVMLELRGSSTGSVEEDAGWFDLFSKRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSAGIASDVAASALVSASNVIGTAVASSLMDKQGRKSLLITSFTGMAVSMLLLSLSLSWKALAQYSGTLAVLGTVLYVVSFSLGAGPVPALLLPEIFASRIRAKAVSLSLGMHWVSNFVIGLYFLSVVNKFGISKVYLGFATVCLLAVIYVANNVVETKGRSLEEIERALSAGT

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1532	5	94			0.997984
1533	94			5	0.9982
1534			94	5	0.9982
2038		92		7	0.999664
2189	92	7			0.999532
2246			93	6	0.99903
2299	71	21	7		1.0
2300	78	14			0.999974
2301		21	71	7	1.0
2305	90			10	0.90298
2310	88	11			0.923564
2312	11		88		0.923564
2314	88		11		0.923564
2316	88			11	0.923564
2317		12	87		0.992554
2320		85	14		0.993533
2322	85	14			0.993533
2323	85		14		0.993533
2331	40			60	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2171	2182	TTC TTC TTC TTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain