SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14968

Length: 2035 nt

UniGene Fasta

>sp_v3.0_unigene14968
AGGAAAACAATGCCTATTAGGGCAGCGCATACATTGAATGTATTCACTGGTTACAGAAACCATGTCCGGGTCTGGAATTTAGATTAGATTGTACATGCAGTTCAATCAATTCCATCGTCTTCATTTATGTGTGCACGCTAAGTTCCAACGATACAGTCCTTTGAAGCACGTGGAAAGAAACTCGGTCTCTGCAGTGGACATAAACCCTAGTGAGTTTTAGGGTTTCATGTAGAGAAGGATTGAAATCTGTTGGCGATGGGATCCTTGGATGAATCCACTTGCAGCGAAGAGATCAGAGATGAAGGCAAGGATTCAATTAGGACTAAATTTAAAGTCGAGTCCACTGTAAATAATGTACAAAACGGAGGCAATGACAATTCAAAGAAGAAAAGAGCGGCCGGCCTTCCCCTGGAAGTTGGCATTCGTCTCCTTTGCAAGTGGAGGGATTCGAAACTGCACCCTGTTAAAATCATTGAGCGTCGTAAGCTTCCTAATGGGTTTCCTCAAGATTACGAGTATTACGTTCACTACACTGAATTCAATAGAAGGCTTGATGAGTGGGTGAAACTTGAGCAATTTGAACTTGATTCTGTGGAGACTGATGCTGATGAGAAAATTGAGGACAAGGGAGGAAGCTTGAAAATGACTCGCCACCAGAAACGCAAAATTGATGAAATCCACGTTGAAGAGGGTCAGGGTCATGAGGATTTTGATCCTGCTAGCCTTCGAGAGCATGAAGAGTTTACGAAAGTTAAGAACATAGCAAAGGTAGAGCTTGGGAGGTATGAGATTGAGACGTGGTACTTTTCACCTTTCCCTCCTGAATACAGCCATTGTGAGAAGTTATTCTTTTGCGAATTTTGTCTCAATTTCATGAAGAGGAAAGAACAGCTTCAAAGACATATGAGGAAGTGCGATCTAAAGCATCCACCTGGAGATGAAATATATCGCAATGGAACCCTCTCCATGTTTGAGGTTGATGGAAAGAAGAACAAGATATATGGGCAGAACCTCTGCTATCTGGCAAAGTTATTCCTCGATCACAAGACACTTTATTATGATGTTGATTTGTTCCTTTTTTACGTTCTTTGTGAATGCGATGATCGTGGATGCCATGTTGTGGGATACTTTTCAAAGGAGAAGCATTCTGATGAAGCATATAATTTGGCCTGCATTCTTACTCTTCCCCCATATCAGAGAAAAGGATATGGAAAGTTCCTCATAGCTTTTTCATATGAATTGTCCAAAAAAGAAGGGAAGGTTGGGACCCCAGAGCGCCCTCTGTCTGATCTTGGGTTATTAAGTTACAGAGGATACTGGACAAGGATCCTTCTTGACATTCTTAAGAAACATAGGGGTAACATTTCAATCAAGGAACTTAGTGACATGACAGCTATCAAGGTAGAAGATGTTATCAGTACACTGCAAGTGTTGGATCTTATTCAGTATCGGAAAGGACAGCATGTTATATGCGCCGATCCGAAGGTTTTAGATCGTCACTTGAAAGCCGCTGGAATAGCTGGGCTGGAAATTGATGTATCTAAGCTTATCTGGACTCCCTACAAAGAGCAATGTGGATGATTAAATTTTTTAGACATGTTTCTTCATGGTTATACTGAGCGAAATGATAAAATCTAGCAATTTCATGCTTTTTTGCATCCTTTGGAAAGGTAGCTAGAGAAAATTGCTCCTGGTGAAGAGGCAGTTGTATATTTGTTTCCATGGTGGTTTTGATATTCTTTTTCAAATCTGAGAACATCTCTTACTCATTATTGCGAAAGTTTAAGGTTTCATCATGCATCCCTGCGTGCAACAAGTTGTGATAATTTAAGGCTGAATGAACAGCATTCCAGCACACAAGTGTCACTTGAAGAAATTCATCAATTCTTTGAAATTATTGTTCCCTTTAATGCGGCCCCTTTCTGGAGGGGCAATCAATGTCTGCGTTGCCACTCTTTTGATGAGGATTGTAAAGGAACGGTACCTTTGCCAATAAAGTAATGAAAATTTTCTAACGAGATGTGACCTTTAAAAC

Ace file of the UniGene sp_v3.0_unigene14968

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone acetyltransferase protein HAC108 [Zea mays]	-	-	0.0	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Histone acetyltransferase	-	-	6.133e-28	-

Source	Gene names
Sma3	181-1d10; At5g09740; At5g64610; CHLREDRAFT_192045; CHLREDRAFT_99077; GSVIVT00015313001; HAC108; HAG4; HAG5; HAG901; HAG902; HAM1501; HAM1502; HAM1503; HAM3501; HAM3502; HAM3503; LOC_Os07g43360; MICPUCDRAFT_32053; MICPUCDRAFT_3400; MICPUCDRAFT_45330; MICPU

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3		GO:0004406	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	MOZ/SAS-like protein	IPR002717	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G64610.1	HAM1 histone acetyltransferase of the MYST family 1 chr5:25828333-25830503 REVERSE LENGTH=445	84%
RefSeq	Arabidopsis thaliana	NP_201266.1	histone acetyltransferase MYST1 [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002307411.1	histone acetyltransferase [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUX9

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 442 - 458

Fln protein: MGSLDESTCSEEIRDEGKDSIRTKFKVESTVNNVQNGGNDNSKKKRAAGLPLEVGIRLLCKWRDSKLHPVKIIERRKLPNGFPQDYEYYVHYTEFNRRLDEWVKLEQFELDSVETDADEKIEDKGGSLKMTRHQKRKIDEIHVEEGQGHEDFDPASLREHEEFTKVKNIAKVELGRYEIETWYFSPFPPEYSHCEKLFFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRNGTLSMFEVDGKKNKIYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHVVGYFSKEKHSDEAYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRILLDILKKHRGNISIKELSDMTAIKVEDVISTLQVLDLIQYRKGQHVICADPKVLDRHLKAAGIAGLEIDVSKLIWTPYKEQCG*

Protein Length: 443

Fln nts: AGGAAAACAATGCCTATTAGGGCAGCGCATACATTGAATGTATTCACTGGTTACAGAAACCATGTCCGGGTCTGGAATTTAGATTAGATTGTACATGCAGTTCAATCAATTCCATCGTCTTCATTTATGTGTGCACGCTAAGTTCCAACGATACAGTCCTTTGAAGCACGTGGAAAGAAACTCGGTCTCTGCAGTGGACATAAACCCTAGTGAGTTTTAGGGTTTCATGTAGAGAAGGATTGAAATCTGTTGGCG_-_ATGGGATCCTTGGATGAATCCACTTGCAGCGAAGAGATCAGAGATGAAGGCAAGGATTCAATTAGGACTAAATTTAAAGTCGAGTCCACTGTAAATAATGTACAAAACGGAGGCAATGACAATTCAAAGAAGAAAAGAGCGGCCGGCCTTCCCCTGGAAGTTGGCATTCGTCTCCTTTGCAAGTGGAGGGATTCGAAACTGCACCCTGTTAAAATCATTGAGCGTCGTAAGCTTCCTAATGGGTTTCCTCAAGATTACGAGTATTACGTTCACTACACTGAATTCAATAGAAGGCTTGATGAGTGGGTGAAACTTGAGCAATTTGAACTTGATTCTGTGGAGACTGATGCTGATGAGAAAATTGAGGACAAGGGAGGAAGCTTGAAAATGACTCGCCACCAGAAACGCAAAATTGATGAAATCCACGTTGAAGAGGGTCAGGGTCATGAGGATTTTGATCCTGCTAGCCTTCGAGAGCATGAAGAGTTTACGAAAGTTAAGAACATAGCAAAGGTAGAGCTTGGGAGGTATGAGATTGAGACGTGGTACTTTTCACCTTTCCCTCCTGAATACAGCCATTGTGAGAAGTTATTCTTTTGCGAATTTTGTCTCAATTTCATGAAGAGGAAAGAACAGCTTCAAAGACATATGAGGAAGTGCGATCTAAAGCATCCACCTGGAGATGAAATATATCGCAATGGAACCCTCTCCATGTTTGAGGTTGATGGAAAGAAGAACAAGATATATGGGCAGAACCTCTGCTATCTGGCAAAGTTATTCCTCGATCACAAGACACTTTATTATGATGTTGATTTGTTCCTTTTTTACGTTCTTTGTGAATGCGATGATCGTGGATGCCATGTTGTGGGATACTTTTCAAAGGAGAAGCATTCTGATGAAGCATATAATTTGGCCTGCATTCTTACTCTTCCCCCATATCAGAGAAAAGGATATGGAAAGTTCCTCATAGCTTTTTCATATGAATTGTCCAAAAAAGAAGGGAAGGTTGGGACCCCAGAGCGCCCTCTGTCTGATCTTGGGTTATTAAGTTACAGAGGATACTGGACAAGGATCCTTCTTGACATTCTTAAGAAACATAGGGGTAACATTTCAATCAAGGAACTTAGTGACATGACAGCTATCAAGGTAGAAGATGTTATCAGTACACTGCAAGTGTTGGATCTTATTCAGTATCGGAAAGGACAGCATGTTATATGCGCCGATCCGAAGGTTTTAGATCGTCACTTGAAAGCCGCTGGAATAGCTGGGCTGGAAATTGATGTATCTAAGCTTATCTGGACTCCCTACAAAGAGCAATGTGGATGATTAAATTTTTTAGACATGTTTCTTCATGGTTATACTGAGCGAAATGATAAAATCTAGCAATTTCATGCTTTTTTGCATCCTTTGGAAAGGTAGCTAGAGAAAATTGCTCCTGGTGAAGAGGCAGTTGTATATTTGTTTCCATGGTGGTTTTGATATTCTTTTTCAAATCTGAGAACATCTCTTACTCATTATTGCGAAAGTTTAAGGTTTCATCATGCATCCCTGCGTGCAACAAGTTGTGATAATTTAAGGCTGAATGAACAGCATTCCAGCACACAAGTGTCACTTGAAGAAATTCATCAATTCTTTGAAATTATTGTTCCCTTTAATGCGGCCCCTTTCTGGAGGGGCAATCAATGTCTGCGTTGCCACTCTTTTGATGAGGATTGTAAAGGAACGGTACCTTTGCCAATAAAGTAATGAAAATTTTCTAACGAGATGTGACCTTTAAAAC

Fln Alignment:

Contig14968___TKFKVESTVNNVQNGGNDNSKKKRAAGLPLEVGIRLLCKWRDSKLHPVKIIERRKLPNGFPQDYEYYVHYTEFNRRLDEWVKLEQFELDSVETDADEKIEDKGGSLKMTRHQKRKIDEIHVEEGQGHEDFDPASLREHEEFTKVKNIAKVELGRYEIETWYFSPFPPEYSHCEKLFFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRNGTLSMFEVDGKKNKIYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHVVGYFSKEKHSDEAYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRILLDILKKHRGNISIKELSDMTAIKVEDVISTLQVLDLIQYRKGQHVICADPKVLDRHLKAAGIAGLEIDVSKLIWTPYKEQ
A9NUX9_______________TNVKVETP----SSPDHDLVRKRKLGFLPLEVGTRVLCKWRDGKFHPVKIIERRKLPNGTTNDYEYYVHYTEFNRRLDEWVKLEQLELDSVETDADEKVDDKAGSLKMTRHQKRKIDETHVE---GNEELDAASLREHEEFTKVKNITKIELGRYEIETWYFSPFPAEYNSCEKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYAQNLCYLAKLFLDHKTLYYDVDLFLFYILCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLISFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKNNISIKELSDMTAIKAEDVLSTLQGLDLIQYRKGQHAICADPKVLDRHLKAVGRGGLEVDVCKLIWTPYKEQ

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
62	75	25			0.996473
75		25	75		0.996473
147	75			25	0.996473
155	75		25		0.996473
183		80	20		0.995493
184			80	20	0.995493
200	75		25		0.996473
996	75		25		0.996473
1233		25		25	1.0
1356	80		20		0.995493
1597	87		12		0.992554
1599	87	12			0.992554
1603			12	87	0.992554
1604			12	87	0.992554
1611		12	87		0.992554
1612	12		87		0.992554
1617	87		12		0.992554
1622	12		87		0.992554
1625	88			11	0.923564
1626	88	11			0.923564
1627	88		11		0.923564
1631		11	11	77	0.968132
1632	88	11			0.923564
1633	88			11	0.923564
1634	88			11	0.923564
1635	88		11		0.923564
1636			11	88	0.923564
1639	88		11		0.923564
1640			88	11	0.923564
1643	88	11			0.923564
1681	88		11		0.923564
1944		83		16	0.994512
1956			16	83	0.994512
2005		33	66		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain