SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14952

Length: 363 nt

UniGene Fasta

>sp_v3.0_unigene14952
ATGGGGAAAAGATAAAGTCAAAGGTTCTGGGCAGGCTGAGGCAGGTGTTCCATCTGTTGATCTTGGTAGGGTGCCTGATGTAAGCAAGCCACATGACGGGCTAGGTAAATCTGCCAAGGGTCATAAGAAGATTCCTCATAGCTTTACCCAAGTTATAGATCAACTTTTGGAGGTAATATTGCACTATCCACCACCAACACAGGAGGATGAATGCACAGGTTCAACAACAGCCATGGAGGTTGATGAATCTGCTCCGAAGGAAAAAGGAAAAGCAAAGATTGATGAATTGGCAAAATTAGAAAGTGACAAAGTTTCTGAAAGCTCTGCAGGGTTGGCAAAAGTTGCTTTTATTTTGAAGTTGAT

Ace file of the UniGene sp_v3.0_unigene14952

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to E3 ubiquitin-protein ligase UPL1 n=1 Tax=Vitis vinifera RepID=UPI00019857DB	-	-	4.0e-27	56%
FL-Next	sp=E3 ubiquitin-protein ligase UPL2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%

Source	Gene names
Sma3	GSVIVT00033389001; POPTRDRAFT_815774; RCOM_0522490;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF908	IPR010309	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF913	IPR010314	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002298873.1	predicted protein [Populus trichocarpa]	2.0e-29	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8H0T4

Fln msg: Distance to subject end: 1847 aas, your sequence is shorter than subject: 120 - 3658

Fln protein: WGKDKVKGSGQAEAGVPSVDLGRVPDVSKPHDGLGKSAKGHKKIPHSFTQVIDQLLEVILHYPPPTQEDECTGSTTAMEVDESAPKEKGKAKIDELAKLESDKVSESSAGLAKVAFILKL

Protein Length: 121

Fln nts: ATGGGGAAAAGATAAAGTCAAAGGTTCTGGGCAGGCTGAGGCAGGTGTTCCATCTGTTGATCTTGGTAGGGTGCCTGATGTAAGCAAGCCACATGACGGGCTAGGTAAATCTGCCAAGGGTCATAAGAAGATTCCTCATAGCTTTACCCAAGTTATAGATCAACTTTTGGAGGTAATATTGCACTATCCACCACCAACACAGGAGGATGAATGCACAGGTTCAACAACAGCCATGGAGGTTGATGAATCTGCTCCGAAGGAAAAAGGAAAAGCAAAGATTGATGAATTGGCAAAATTAGAAAGTGACAAAGTTTCTGAAAGCTCTGCAGGGTTGGCAAAAGTTGCTTTTATTTTGAAGTTGAT

Fln Alignment:

Contig14952___KDKVKGSGQAEAGVPSVDLGRVPDVSKPHDGLGKSAKGHKKIPHSFTQVIDQLLEVILHYPPPTQEDECTGSTTAMEVDESAPKEKGKAKIDELAKLESDKVSESSAGLAKVAFILKL
Q8H0T4_______________KEKPKVSGSEHGFSLNEPLGI--SENKLHDGSGKCSKSHRRVPTNFIQVIDQLIDIVLSFPGLKRQEGEAANLISMDVDEPTTKVKGKSKVGEPEKAELG--SEKSEELARVTFILKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain