SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14948

Length: 2177 nt

UniGene Fasta

>sp_v3.0_unigene14948
AGTACCATATTCACAAATGTTATCATTTTCTCCTCTACACAATGGTTCGTTGAGTCTGACAGCTGGTGGCTCTGCTGTCAACAATCTTGATAGCCTGCATTCCACTATAAATCCCACTTCAGATTTCCTGGACGGGCTTTCTCCTGTCGATGTTGCAGGTCGAGCGGCAAGTCCAAGCAGGATCGACAAATCCTCCGCGGCAGCACTTGCCGTTGCAGCCATGAATGAGCTCTTCAGAATGGCTCGAATGCAACACCCTTTCTGGATCTCAAATCCTCATGCCGATGGGATAACGGAAACCCTAAACCATGAAGAATACATCCGACAATTCACGAGGGTTCTCGGCCCTAAACCGCTGGGATACAGAACTGAAGCAAACAGGCATGCAGGCACCGTGCTTATGAATAGTCAGAATCTGGTGGAGATACTAATGAGTGCGAACCGTTATGCGGAAATGTTCCCATCGATTGTTTCGAGAGCCACAACAATGGAGGTCGTATGCAGTGGTGTAGGGGGTACCAGGAACGGTGAACTCCAATTGATGTATATGGAGCTCCATGTTCTGTCACCGCTTGGTCCAGCCAGAGAATTCTATTTCTTAAGGTTCTGTCAGCAGCTTGGTGCAGGCATTTGGGCCATCGTAGATGTTTCTGCTGACAGTTTAGTGGAGAACACAATTCCGGCGAATTGCAAGAGGCAGCCATCGGGATTAATAATTCAAGAACTCCCTGGCAATTTTTCAACTGTTACTTGGGTAGAGCACATCGAGTGTGACGATAGAGGTGTGTACAGCCTCTATCGTCCTGTGGTCAGCTCCGGTTTCGCGTTTGGGTCGCAGCGTTGGCTGTCAGCGCTCCAGCACCAATGCGAACGTCTCGCTCTCCTCATGGAAATAAATGCAGATACCAGTGCTTTCCCAGATCCGAGAGGCCGGCAAAGCTTGCTGAAACTTGTTCAGCGAATGACGAGTGACTTCTGTACTAGTCTGAGTCCATCGATGGTTAACAACTGGGCAACGTTATCTGGTGATGGCGATGAGGATATTCGAGTGTCCACACGGAAGAACATGGAGAACCCTGAGTTGCCTGGCCGTGTTGTGCTCTGTGCTGCCACTTCAGTCTGGCTTCCCGTTACTCCTCAGAAATCGTTCGATTTCCTGCGAGATCTGAATCGTCGAAGCCAGTGGGATATGCTCTCTACCGGCGAACCAAAGCAAGAAATAACCCGCGTTGTAAGGGGGCAAGATCGTCGGAACAGTATTAGCCTCCTCGCATCAAATGGTATGAATATGGATCAGACTGCATTCATTTTACAGGAGTGCTGTACAGATGCTTGGGGGTCTATTATTGTTTATGCTCCTTTTGACATTGCTTCCATGCATACAGTGATGCAGGGAGGTGAATCTGATTATGTTTCCGTTTTGCCATCTGGCTTTGTGATTCTCCCAGATGGCCTTGGTGGTACACTGACTGAAATTGAAAGTAGCTCAAGTAGTATGCAGAAAAGGGGATCTATCCTGACAGTTGCATTCCAAATATTGTTAGCCAATATGACAACGCCCCGCCCTGCCATGGAAGATGTGCAAGCGGTGCAACGATTGATCTCCTACACAGTACAGAAAATCAGAACAGCATTGATTTTGGACGATGCTTGACAGAATCTATTCTATTCTTCCTAGTTCTCAATTTTGAAGTGATTCCGTATTTCATTTTTTCCTTATTTATCTGTTCCAATCTAGACTACCTGCAAAAGATCAGCCACTACCTGCAAAACAATATCAAAGGATGGGTGATGAGGTGATGATGGATATCAATAATGTTTGGTTGACATTGGCCATGCTATGCAGCATTAAGGTTCCCAGAAAGATATCATTTGTGATGGAAGCCGATAGCAAAATGAATTTCCAAAAGCAATTGGGTAATAGCTGCTTTGGTTATGCATCTTCGGGAGTCAAGAGCGCACCACATATATCCTTGCCAAGTGGTAAAGCACAACTACACTCCAAAAGTCCCCTGACTCTTCCAGCATAATAAAGAACTTCTGTTCTGGGGATTGAATCAATTGTCCATGAGCTTTACCACTATGCAAGGGCTATGGTTCGGGTATTGACTTCCATCTAAACAGAAATAGTGTATCTATTACTGAACATTTTCACCGATGAAATTAAGTTCCATCCC

Ace file of the UniGene sp_v3.0_unigene14948

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeodomain protein HB2 n=1 Tax=Picea abies RepID=Q8S555_PICAB	-	-	0.0	49%
FL-Next	tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	49%
Sma3	Homeobox protein, putative	-	-	9.212e-13	-

Source	Gene names
Sma3	ANL2; AT1G05230; ATML1; At1g05230; At2g32370; At3g61150; At4g00730; At4g04890; At4g21750; At5g52170; F17L22.210; F17P19.7; F6N23.10; GL2-1; GL2-2; GL2-4; GL2-5; GL2-6; GL2-7; GSVIVT00000869001; GSVIVT00006904001; GSVIVT00007373001; GSVIVT00015683001; GSVI

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	epidermal cell differentiation	GO:0009913	Biological Process	-
Sma3	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G04890.1	PDF2 protodermal factor 2 chr4:2476970-2480090 REVERSE LENGTH=743	47%
RefSeq	Arabidopsis thaliana	NP_567274.1	homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002320755.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8S555

Fln msg: your sequence is shorter than subject: 551 - 708

Fln protein: VPYSQMLSFSPLHNGSLSLTAGGSAVNNLDSLHSTINPTSDFLDGLSPVDVAGRAASPSRIDKSSAAALAVAAMNELFRMARMQHPFWISNPHADGITETLNHEEYIRQFTRVLGPKPLGYRTEANRHAGTVLMNSQNLVEILMSANRYAEMFPSIVSRATTMEVVCSGVGGTRNGELQLMYMELHVLSPLGPAREFYFLRFCQQLGAGIWAIVDVSADSLVENTIPANCKRQPSGLIIQELPGNFSTVTWVEHIECDDRGVYSLYRPVVSSGFAFGSQRWLSALQHQCERLALLMEINADTSAFPDPRGRQSLLKLVQRMTSDFCTSLSPSMVNNWATLSGDGDEDIRVSTRKNMENPELPGRVVLCAATSVWLPVTPQKSFDFLRDLNRRSQWDMLSTGEPKQEITRVVRGQDRRNSISLLASNGMNMDQTAFILQECCTDAWGSIIVYAPFDIASMHTVMQGGESDYVSVLPSGFVILPDGLGGTLTEIESSSSSMQKRGSILTVAFQILLANMTTPRPAMEDVQAVQRLISYTVQKIRTALILDDA*

Protein Length: 552

Fln nts: AGTACCATATTCACAAATGTTATCATTTTCTCCTCTACACAATGGTTCGTTGAGTCTGACAGCTGGTGGCTCTGCTGTCAACAATCTTGATAGCCTGCATTCCACTATAAATCCCACTTCAGATTTCCTGGACGGGCTTTCTCCTGTCGATGTTGCAGGTCGAGCGGCAAGTCCAAGCAGGATCGACAAATCCTCCGCGGCAGCACTTGCCGTTGCAGCCATGAATGAGCTCTTCAGAATGGCTCGAATGCAACACCCTTTCTGGATCTCAAATCCTCATGCCGATGGGATAACGGAAACCCTAAACCATGAAGAATACATCCGACAATTCACGAGGGTTCTCGGCCCTAAACCGCTGGGATACAGAACTGAAGCAAACAGGCATGCAGGCACCGTGCTTATGAATAGTCAGAATCTGGTGGAGATACTAATGAGTGCGAACCGTTATGCGGAAATGTTCCCATCGATTGTTTCGAGAGCCACAACAATGGAGGTCGTATGCAGTGGTGTAGGGGGTACCAGGAACGGTGAACTCCAATTGATGTATATGGAGCTCCATGTTCTGTCACCGCTTGGTCCAGCCAGAGAATTCTATTTCTTAAGGTTCTGTCAGCAGCTTGGTGCAGGCATTTGGGCCATCGTAGATGTTTCTGCTGACAGTTTAGTGGAGAACACAATTCCGGCGAATTGCAAGAGGCAGCCATCGGGATTAATAATTCAAGAACTCCCTGGCAATTTTTCAACTGTTACTTGGGTAGAGCACATCGAGTGTGACGATAGAGGTGTGTACAGCCTCTATCGTCCTGTGGTCAGCTCCGGTTTCGCGTTTGGGTCGCAGCGTTGGCTGTCAGCGCTCCAGCACCAATGCGAACGTCTCGCTCTCCTCATGGAAATAAATGCAGATACCAGTGCTTTCCCAGATCCGAGAGGCCGGCAAAGCTTGCTGAAACTTGTTCAGCGAATGACGAGTGACTTCTGTACTAGTCTGAGTCCATCGATGGTTAACAACTGGGCAACGTTATCTGGTGATGGCGATGAGGATATTCGAGTGTCCACACGGAAGAACATGGAGAACCCTGAGTTGCCTGGCCGTGTTGTGCTCTGTGCTGCCACTTCAGTCTGGCTTCCCGTTACTCCTCAGAAATCGTTCGATTTCCTGCGAGATCTGAATCGTCGAAGCCAGTGGGATATGCTCTCTACCGGCGAACCAAAGCAAGAAATAACCCGCGTTGTAAGGGGGCAAGATCGTCGGAACAGTATTAGCCTCCTCGCATCAAATGGTATGAATATGGATCAGACTGCATTCATTTTACAGGAGTGCTGTACAGATGCTTGGGGGTCTATTATTGTTTATGCTCCTTTTGACATTGCTTCCATGCATACAGTGATGCAGGGAGGTGAATCTGATTATGTTTCCGTTTTGCCATCTGGCTTTGTGATTCTCCCAGATGGCCTTGGTGGTACACTGACTGAAATTGAAAGTAGCTCAAGTAGTATGCAGAAAAGGGGATCTATCCTGACAGTTGCATTCCAAATATTGTTAGCCAATATGACAACGCCCCGCCCTGCCATGGAAGATGTGCAAGCGGTGCAACGATTGATCTCCTACACAGTACAGAAAATCAGAACAGCATTGATTTTGGACGATGCTTGA___CAGAATCTATTCTATTCTTCCTAGTTCTCAATTTTGAAGTGATTCCGTATTTCATTTTTTCCTTATTTATCTGTTCCAATCTAGACTACCTGCAAAAGATCAGCCACTACCTGCAAAACAATATCAAAGGATGGGTGATGAGGTGATGATGGATATCAATAATGTTTGGTTGACATTGGCCATGCTATGCAGCATTAAGGTTCCCAGAAAGATATCATTTGTGATGGAAGCCGATAGCAAAATGAATTTCCAAAAGCAATTGGGTAATAGCTGCTTTGGTTATGCATCTTCGGGAGTCAAGAGCGCACCACATATATCCTTGCCAAGTGGTAAAGCACAACTACACTCCAAAAGTCCCCTGACTCTTCCAGCATAATAAAGAACTTCTGTTCTGGGGATTGAATCAATTGTCCATGAGCTTTACCACTATGCAAGGGCTATGGTTCGGGTATTGACTTCCATCTAAACAGAAATAGTGTATCTATTACTGAACATTTTCACCGATGAAATTAAGTTCCATCCC

Fln Alignment:

Contig14948___PYSQMLSFSPLHNGSLSLTAGGSAVNNLDSLHSTINPTSDFLDGLSPVDVAGRAASPSRIDKSSXXXXXXXXMNELFRMARMQHPFWISNPHADGITETLNHEEYIRQFTRVLGPKPLGYRTEANRHAGTVLMNSQNLVEILMSANRYAEMFPSIVSRATTMEVVCSGVGGTRNGELQLMYMELHVLSPLGPAREFYFLRFCQQLGAGIWAIVDVSADSLVENTIPA---NCKRQPSGLIIQELPGNFSTVTWVEHIECDDRGVYSLYRPVVSSGFAFGSQRWLSALQHQCERLALLM---EINA-DTSAFPDPRGRQSLLKLVQRMTSDFCTSLSPSMVNNWATLSGDGDEDIRVSTRKNMENPELPGRVVLCAATSVWLPVTPQKSFDFLRDLNRRSQWDMLSTGEPKQEITRVVRGQDRRNSISLLASNGMNMDQTA--FILQECCTDAWGSIIVYAPFDIASMHTVMQGGESDYVSVLPSGFVILPDGLGGTLTEIESSS-----SSMQKRGSILTVAFQILLANMTTPRPAMEDVQAVQRLISYTVQKIRTALILDDA
Q8S555_______________PVPSMPSVPLMPKSSLDLGVGGMPT-------SLPSGCADLMHG----PAGGRTGNIIGIERSMLAELALASMDELFKMAQADETLWI--PNLDAGKETLNYEEYMRQFPSTITPKLIGLATEATRETGMVITNSLNLVETLMDVDRWKEMFPCMISRAAMVDVISSGMSGTRNGALQLMYAELQVLSPLVPAREVYFLRFCKQHAEGVWAVVDVSVDSLRDNS-PAGFMKCRRLPSGCLIQDMPNGYSKVTWVEHAEYDDRGVHRLYRSLLNSGMAFGAQRWLATLQRQCECLAILMATANVTARDPTAIRTPNGRRSMLRLAQRMTDNFCAGVSASTVHTWNKLSGNIDDDVRVMTRKSVDDPGEPPGVVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIPKGQDPGNCVSLLKASAMNSNQSSSMLILQKTCTNASGSLVVYAPVDIPAMHVVMSGGDPPYVALLPSGFAILPNGPKCRPLALNPSGNGVGVNSPRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCEDA

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
236	75	25			0.996473
259	25			75	0.996473
283	25	75			0.996473
288			66	33	0.997452
320	66	33			0.997452
331		66		33	0.997452
344	20		80		0.995493
394		80		20	0.995493
411	80			20	0.995493
1068		12		87	0.992554
1554		14	85		0.993533
1556		85		14	0.993533
1557	85			14	0.993533
1653			30	70	1.0
1658	90	10			0.90298
1659			90	10	0.90298
1660	90			10	0.90298
1661	90		10		0.90298
1662			10	90	0.90298
1666			10	90	0.90298
1671		10		90	0.90298
1710	88		11		0.923564
1712		11		88	0.923564
1713			11	88	0.923564
1715			11	88	0.923564
1716	11			88	0.923564
1721	88		11		0.923564
1722			11	88	0.923564
1774	78		14	7	0.999974
2043		75	25		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain