SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14928

Length: 314 nt

UniGene Fasta

>sp_v3.0_unigene14928
GGAAAAAGTGTTGCCATTGTTGGAACTAGTGGTAGCGGAAAATCTACTATACTTAGGCTTTTGTATCGGTTTTATGATGCTCAATCAGGATCAGTAAGGATAGATGGCCAAGATATAAGAAATGTGACGCTCCATAGTCTGAGAAAGTCCCTTGCTGTAGTTCCTCAGGATACTGTACTTTTCAATGATACAATATTCCATAACATACATTATGGCCGATTGACAGCAACCGAAGAGGAGGTATATGATGCTGCTCGTCATGCAGCAATACATGATACAATTTTACGGTTTCCTGAGCAATACCAAACTCGTGT

Ace file of the UniGene sp_v3.0_unigene14928

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transporter ATM1, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9T3V9_RICCO	-	-	2.94273e-44	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Multidrug/pheromone exporter, MDR family, ABC transporter family	-	-	1.159e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	1.989e-12	-

Source	Gene names
Sma3	AT4g28630; ATM2; ATM3; At1g10680; At1g27940; At1g28010; At2g36910; At3g28344; At3g28345; At3g28380; At3g28390; At3g28415; At3g28860; At4g28620; At4g28630; At5g58270; CDS1; CHLREDRAFT_105113; CHLREDRAFT_133289; CHLREDRAFT_99736; CMDR1; Cds1; F13K9.11; F13K

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	auxin efflux transmembrane transporter activity	GO:0010329	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	regulation of cell size	GO:0008361	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to blue light	GO:0009637	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	positive gravitropism	GO:0009958	Biological Process	-
Sma3	response to far red light	GO:0010218	Biological Process	-
Sma3	basipetal auxin transport	GO:0010540	Biological Process	-
Sma3	acropetal auxin transport	GO:0010541	Biological Process	-
Sma3	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Vacuolar fusion protein MON1	IPR004353	-	-
Sma3	ABC transporter, lipid A export, MsbA	IPR011917	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G28630.1	ATM1, ATATM1 ABC transporter of the mitochondrion 1 chr4:14138535-14140895 REVERSE LENGTH=678	76%
RefSeq	Arabidopsis thaliana	NP_567813.1	ABC transporter B family member 23 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002319987.1	ABC transporter family of the mitochondria family [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW03

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 104 - 636

Fln protein: GKSVAIVGTSGSGKSTILRLLYRFYDAQSGSVRIDGQDIRNVTLHSLRKSLAVVPQDTVLFNDTIFHNIHYGRLTATEEEVYDAARHAAIHDTILRFPEQYQTR

Protein Length: 105

Fln nts: GGAAAAAGTGTTGCCATTGTTGGAACTAGTGGTAGCGGAAAATCTACTATACTTAGGCTTTTGTATCGGTTTTATGATGCTCAATCAGGATCAGTAAGGATAGATGGCCAAGATATAAGAAATGTGACGCTCCATAGTCTGAGAAAGTCCCTTGCTGTAGTTCCTCAGGATACTGTACTTTTCAATGATACAATATTCCATAACATACATTATGGCCGATTGACAGCAACCGAAGAGGAGGTATATGATGCTGCTCGTCATGCAGCAATACATGATACAATTTTACGGTTTCCTGAGCAATACCAAACTCGTGT

Fln Alignment:

Contig14928___GKSVAIVGTSGSGKSTILRLLYRFYDAQSGSVRIDGQDIRNVTLHSLRKSLAVVPQDTVLFNDTIFHNIHYGRLTATEEEVYDAARHAAIHDTILRFPEQYQT
A9NW03_______________GESIAIVGPSGSGKSTIVKLILRLYDPSNGTLSMDGHDICSIRKDSLRKAVAVVPQDTVLFNDTIFHNILYGLPTASEADVTRAARQAHLHEAVLQMPKGYMT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
121	25		75		0.996473
211	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain