SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14896

Length: 293 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene14896
GCCCAAACGTTTCATAGACTACCAAGACTTAAATCAAGCTACAGTAAAGAATCGGTATCCAATGTCTCGAATTGATGACCTCTTTGACCAAATGAAAGGAAATGTTGTCTTCTCAAAAATCGATCTACAATCAGACTATCATCAGCTAAGGATTAAGGAAAGTGATATCTCTAAGACTGCATTCCGAACATGTTTCGAGCATTATGAGTTCACTGTGGTACCATTTGGGTTGACCAATGTACCAGCAGTATTCATGAACCTTATGAATAGCGTTTTCCGCAAATATCTCAATC

Ace file of the UniGene sp_v3.0_unigene14896 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=2 Tax=Peperomia caperata RepID=Q56GE9_PEPCA	-	-	3.0e-32	67%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	49%
Sma3	Reverse transcriptase	-	-	0.0	-

Source	Gene names
Sma3	B1159F04.11; H0502G05.10; H0624F09.1; H0807C06-H0308C08.9; H0813E03.8; H0818H01.18; LOC_Os03g15160; LOC_Os03g23220; LOC_Os03g23800; LOC_Os03g23830; LOC_Os03g23840; LOC_Os03g26750; LOC_Os03g32960; LOC_Os03g41770; LOC_Os03g60050; LOC_Os10g06290; LOC_Os10g06

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase A2A, retrovirus, catalytic	IPR001995	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: Distance to subject end: 40 aas, atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning, your sequence is shorter than subject: 97 - 142

Fln protein: PKRFIDYQDLNQATVKNRYPMSRIDDLFDQMKGNVVFSKIDLQSDYHQLRIKESDISKTAFRTCFEHYEFTVVPFGLTNVPAVFMNLMNSVFRKYLN

Protein Length: 98

Fln nts: GCCCAAACGTTTCATAGACTACCAAGACTTAAATCAAGCTACAGTAAAGAATCGGTATCCAATGTCTCGAATTGATGACCTCTTTGACCAAATGAAAGGAAATGTTGTCTTCTCAAAAATCGATCTACAATCAGACTATCATCAGCTAAGGATTAAGGAAAGTGATATCTCTAAGACTGCATTCCGAACATGTTTCGAGCATTATGAGTTCACTGTGGTACCATTTGGGTTGACCAATGTACCAGCAGTATTCATGAACCTTATGAATAGCGTTTTCCGCAAATATCTCAATC

Fln Alignment:

Contig14896___IDYQDLNQATVKNRYPMSRIDDLFDQMKGNVVFSKIDLQSDYHQLRIKESDISKTAFRTCFEHYEFTVVPFGLTNVPAVFMNLMNSVFRKYLN
P31843_______________IDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain