SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14883

Length: 314 nt

UniGene Fasta

>sp_v3.0_unigene14883
CGTCGTGACCTTGGCTGTCACTCAATTCACAAAAATGCCAATAAAGCCTACCCCTTTCATATGGCGAACCTTGCTTGGTGCCTGCCGAGTTTACGGTAATATGGAGATAGGAAAACGGGCAGCAGATTGCCTTCTTGAGTCGGAACCACAAGATGCTGCAAGTTATGTGCTTCTGTCAAATATCTATGCTTCATCTGGTAAATGGGATGATGCAGTGAAGGTGAGAACAATGATGAAAGAGAAGGGGGTGAAAAAGGACCCCGGGTACAGCTGGATTAAGCTGAAGAATGAAGTGCATGCATTTCTAGTAGGGG

Ace file of the UniGene sp_v3.0_unigene14883

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SVP7.2\|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650 gb\|AEE83309.1\| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	2.0e-27	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Putative pentatricopeptide (PPR) repeat-containing protein	-	-	1.857e-07	-

Source	Gene names
Sma3	At1g68930; At2g27610; At4g02750; At4g13650; At4g33170; At4g39530; At5g09950; At5g48910; F10A12.28; F15K20.29; F18A5.40; F23K16.160; F4I10.100; GSVIVT00000282001; GSVIVT00000680001; GSVIVT00002068001; GSVIVT00006467001; GSVIVT00006516001; GSVIVT00006853001

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	lipid binding	GO:0008289	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	lipid transport	GO:0006869	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3		IPR003612	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G13650.1	Pentatricopeptide repeat (PPR) superfamily protein chr4:7939611-7942898 REVERSE LENGTH=1064	2.0e-33	62%
RefSeq	Arabidopsis thaliana	NP_193101.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	3.0e-33	62%
RefSeq	Populus trichocarpa	XP_002319164.1	predicted protein [Populus trichocarpa]	3.0e-33	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 117 aas, your sequence is shorter than subject: 104 - 246

Fln protein: VVTLAVTQFTKMPIKPTPFIWRTLLGACRVYGNMEIGKRAADCLLESEPQDAASYVLLSNIYASSGKWDDAVKVRTMMKEKGVKKDPGYSWIKLKNEVHAFLVG

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCACAAAAATGCCAATAAAGCCTACCCCTTTCATATGGCGAACCTTGCTTGGTGCCTGCCGAGTTTACGGTAATATGGAGATAGGAAAACGGGCAGCAGATTGCCTTCTTGAGTCGGAACCACAAGATGCTGCAAGTTATGTGCTTCTGTCAAATATCTATGCTTCATCTGGTAAATGGGATGATGCAGTGAAGGTGAGAACAATGATGAAAGAGAAGGGGGTGAAAAAGGACCCCGGGTACAGCTGGATTAAGCTGAAGAATGAAGTGCATGCATTTCTAGTAGGGG

Fln Alignment:

Contig14883___MPIKPTPFIWRTLLGACRVYGNMEIGKRAADCLLESEPQDAASYVLLSNIYASSGKWDDAVKVRTMMKEKGVKKDPGYSWIKLKNEVHAFLV
D5AAE0_______________IPFAPDANVWGALLGACRMYGNIDLGKHAAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain