SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14880

Length: 1078 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14880

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	microtubule-associated protein MAP65-1a [Nicotiana tabacum]	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Microtubule-associated protein MAP65-1a	-	-	1.613e-27	-

Source	Gene names
Sma3	AT2G01910; AT4g26760; At1g14690; At1g27920; At2g01910; At2g38720; At5g51600; At5g55230; At5g62250; F10M23.100; F13K9.3; GSVIVT00002052001; GSVIVT00002822001; GSVIVT00026353001; GSVIVT00027255001; GSVIVT00030649001; GSVIVT00038478001; LOC_Os03g13460; MAP65

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	microtubule cytoskeleton organization	GO:0000226	Biological Process	-
Sma3	nuclear division	GO:0000280	Biological Process	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	cytokinesis by cell plate formation	GO:0000911	Biological Process	-
Sma3	microtubule bundle formation	GO:0001578	Biological Process	-
Sma3	microtubule nucleation	GO:0007020	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	positive regulation of microtubule polymerization	GO:0031116	Biological Process	-
Sma3	anaphase	GO:0051322	Biological Process	-
Sma3	formation by symbiont of syncytium involving giant cell for nutrient acquisition from host	GO:0052096	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G55230.2	MAP65-1 microtubule-associated proteins 65-1 chr5:22402716-22405182 FORWARD LENGTH=616	56%
RefSeq	Arabidopsis thaliana	NP_200334.1	microtubule-associated proteins 65-1 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002322422.1	predicted protein, partial [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC28

Fln msg: Distance to subject end: 354 aas, your sequence is shorter than subject: 238 - 596

Fln protein: MPSLQNDQLLQLETTCGSLLYELQLIWDEMGEPDEERDKMLLQLEQECLEVYRRKVDQSNRSRAQLHQAIADSEAELASIYSALGVCPTMPKQGDRRAGSLKEQLEAITPLLEEMRRRKEERIQQIWDVKMQIQKISNEILGRVELSPSAISVDENDLSVRSFEEYQKQLQSLQREKSERLYKVIEFVNTIHGLCSVLGLDFVRTVTDVHPSLDESEQSKSISNDTVDRLAATIQTLR

Protein Length: 239

Fln nts: CAACGCGATTTGAAATTCTTGATAAGGGAAAAGTCCGGGAGGCGGGGAGTTCGTCTCAAAGAAGGATGATAATGAGTTTTATTGGACGGGAAAACTTTAATCTCGAAATTTGCAGGCGCTATTAGCAGAAATCGGCACCGAATACTTTAGAATGGTTTAATGAATGCGTTATTTTGCAGAAATGCGCACTGAGACATTTCTCTTACTTAGATATGAAAATATTAGCGTCGGAATCTCTAAGCTCATAAGCGTAGTAACGCTGGTTAATTTGTATAGAAACACTGTTTTTGTTTAAATTCCACGATTTGCGAGAATTTCCACCGTAATCTGCAAGGGTATTGTGCATAGGGCACACGTTCAGA_-_ATGCCGAGCTTGCAGAACGATCAGTTATTGCAACTGGAGACAACTTGTGGATCTCTTCTTTACGAGCTCCAGTTAATATGGGACGAAATGGGCGAGCCTGACGAGGAAAGAGATAAAATGTTGCTCCAGCTTGAACAAGAATGCTTGGAAGTTTACAGACGGAAAGTAGATCAATCAAATCGATCAAGGGCTCAGCTTCACCAGGCTATTGCCGATTCCGAAGCAGAGCTCGCATCCATTTATTCTGCCCTCGGAGTTTGCCCTACCATGCCTAAACAGGGAGACAGAAGAGCAGGGAGCCTGAAGGAGCAGCTGGAAGCGATAACTCCTCTGTTGGAAGAAATGCGCCGGAGAAAAGAGGAACGGATTCAGCAAATTTGGGATGTTAAGATGCAGATTCAGAAGATTTCAAATGAAATTTTGGGACGTGTAGAGCTTAGTCCGTCCGCCATTTCAGTGGACGAAAATGATCTATCCGTTAGGAGTTTTGAAGAATACCAGAAGCAACTTCAATCGCTTCAAAGAGAAAAGAGTGAGCGTCTCTACAAAGTCATCGAATTTGTCAACACAATCCATGGATTATGCTCTGTCCTTGGCTTGGATTTTGTACGTACGGTAACAGATGTGCATCCAAGCTTGGATGAGTCTGAACAATCCAAGAGCATTAGTAATGACACTGTTGATAGGTTGGCTGCGACAATTCAAACATTGCGAGA

Fln Alignment:

Contig14880___ETTCGSLLYELQLIWDEMGEPDEERDKMLLQLEQECLEVYRRKVDQSNRSRAQLHQAIADSEAELASIYSALGVCPTMPKQGDRRAGSLKEQLEAITPLLXXXXXXXXXXIQQIWDVKMQIQKISNEILGRVELSP--SAISVDENDLSVRSFEEYQKQLQSLQREKSERLYKVIEFVNTIHGLCSVLGLDFVRTVTDVHPSLDES--EQSKSISNDTVDRLAATIQTLR
D5AC28_______________DTNCGSLLQDLELIWDEVGASDGEREKMLLQLEQECLEVYRRKVDQANLSRARLHQLLADSEAELEHLISALGE-RSFVGRPEKQTGTLKEQLAAIAPALGDLRKKKEERVKKFMDVQVQIQSICAEIAGNLNVNDLCTTPKVDEHDLSLKKLDEFHDQLQELHREKNDRLQKVFDYVNTVHALSAVMGLDFSKIVSEVHPSLDDSAGNQSKSISNDTLAKLAETVESLK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
261	20			80	0.995493
370	75	25			0.996473
570		33		66	0.997452
1077	81		18		0.999994
1078			81	18	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain