SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14859

Length: 1309 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene14859 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9RUB7_RICCO	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Potassium transporter, putative	-	-	3.50325e-44	-

Source	Gene names
Sma3	6J23.11; At1g31120; At1g60160; At1g70300; At2g30070; At2g35060; At2g40540; At3g02050; At4g13420; At4g19960; At4g23640; At4g33530; At5g09400; At5g14880; B1026C12.31-1; B1026C12.31-2; CHLREDRAFT_121823; F17M5.1; F17O7.17; F18F4.60; F1C9.17; F23F1.18; F9D16.

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium:sodium symporter activity	GO:0009674	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G70300.1	KUP6 K+ uptake permease 6 chr1:26477993-26481233 REVERSE LENGTH=782	67%
RefSeq	Arabidopsis thaliana	NP_177187.2	Potassium transporter 6 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002315804.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: Distance to subject end: 108 aas, your sequence is longer than subject: 420 - 250

Fln protein: MYKFMRKTRSGGWKSLGGILLCITGSEAMFADLGHFSQLSIKIAFTLMVYPALILAYMGQAAYISQHHQCVNPIGYFLSVPETVRWPVIGVAIVASVVASQAMITGTFSIINQSLALGYFPRVKVVHTSDKIHGRVYIPEINWILMTLCLAVTFGLRDVKHMGNASGLAVMTVMLVTTIFMSLVIILCWHKSFLLALCFLIFFGLIESLYFSASLVKFIDGAWVPLVLSFILMTIMYAWHSGTLVKYESDLQNKVSLRWLVNLGPSLGLVRVPGIGLIYTELVTGIPPILSHFVTNFSALHQILVLVCIKSVPVPYVPAKERYLIGRVGPNEFGLYRCIIRYGYRDARKDNEDFEDRLILSLGDFICSEQRNSYSISKSSEEEEMAVMGTPMLSGNAIDIVRSCDSVKSIDSATVSYIMS

Protein Length: 421

Fln nts: CGTCGTGACCTTGGCTGTCACTCTATCGTGCACTCTCTCCATATGCT_-_ATGTACAAGTTTATGAGGAAGACCCGGTCTGGAGGATGGAAGTCTTTGGGTGGCATTCTGTTATGTATCACAGGCTCAGAGGCAATGTTCGCAGATCTAGGGCACTTTTCACAATTATCAATAAAGATCGCTTTCACTCTTATGGTTTATCCTGCCTTGATTTTAGCTTACATGGGTCAAGCTGCTTACATTTCACAACATCATCAATGTGTTAATCCAATTGGCTATTTCTTGTCAGTGCCAGAAACTGTTAGATGGCCTGTGATTGGAGTTGCAATAGTAGCATCAGTGGTCGCAAGCCAAGCCATGATCACAGGGACATTTTCAATCATTAACCAATCTCTGGCACTTGGTTATTTTCCTAGGGTAAAGGTGGTACACACGTCAGATAAAATACATGGGAGGGTATATATTCCTGAAATCAACTGGATTCTTATGACATTATGTCTTGCTGTTACTTTTGGTTTGAGGGATGTTAAGCACATGGGAAATGCAAGTGGTTTGGCAGTCATGACTGTTATGCTGGTCACAACCATCTTCATGTCATTAGTAATAATTCTGTGCTGGCACAAGAGTTTCCTGTTAGCTTTGTGCTTCCTTATCTTCTTTGGACTCATCGAATCCTTGTACTTTTCGGCTTCTCTTGTAAAATTTATAGATGGGGCCTGGGTGCCCCTAGTTTTATCCTTCATCCTCATGACAATTATGTATGCATGGCACTCTGGCACACTTGTGAAGTATGAATCGGACCTGCAAAATAAGGTCTCCCTAAGGTGGCTCGTAAATCTAGGTCCCAGTCTAGGATTGGTGAGGGTTCCAGGTATAGGGCTTATATATACGGAACTTGTCACTGGAATACCTCCAATTCTTTCACACTTTGTGACAAATTTTTCAGCGCTCCATCAGATTCTTGTCCTTGTGTGCATCAAGTCTGTCCCAGTACCATATGTTCCAGCAAAGGAACGGTATCTTATTGGGCGTGTTGGCCCCAACGAATTCGGCTTGTATAGATGTATTATAAGATATGGATACCGTGATGCTCGAAAAGATAATGAAGATTTTGAAGACCGACTTATCCTTAGCCTTGGGGACTTTATCTGTTCAGAGCAAAGAAACTCTTATTCGATTAGTAAATCTTCAGAAGAAGAGGAGATGGCTGTCATGGGAACACCCATGCTCTCTGGAAATGCCATTGATATTGTTCGAAGTTGTGATTCAGTGAAGAGCATAGACTCTGCTACAGTGTCTTACATTATGTCACC

Fln Alignment:

Contig14859___IYTELVTGIPPILSHFVTNFSALHQILVLVCIKSVPVPYVPAKERYLIGRVGPNEFGLYRCIIRYGYRDARKDNEDFEDRLILSLGDFICSEQRNXXXXXXXXXXXEMAVMGTPMLSGNAIDIVRSCDSVKSIDSATVSYIMS
D5A8F8_______________MYTELVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDHFEDQLILNLGEFIRSEAKHSCSSDSYSADGRMAVIGTPVHGMESILSYETAE--ESIQSVNLSYLGS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1026	90		10		0.90298
1041		90		10	0.90298
1042		90	10		0.90298
1045			10	90	0.90298
1046		10		90	0.90298
1047		10	90		0.90298
1048	10		90		0.90298
1050			10	90	0.90298
1052	90	10			0.90298
1057	90		10		0.90298
1110			90	10	0.90298
1111		90		10	0.90298
1235	57		42		1.0
1288	60			40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain