SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14817

Length: 534 nt

UniGene Fasta

>sp_v3.0_unigene14817
AATGTCGGAAAACAATGCAACTTACTAATCATTTTGAATTCTATCTACCCCAATTGTACCTATTCTTCTCTGCTTAACAAGACTTTGATAAATGGGCTCCCTGCAACATCAACTTGACATAGATTCCTTGGAGAATTGCTTGGCCCAGCACCACTAGCGGGTAATGCATACATGATATTAACTATGATCTGTTAATTCTGGGAAGCCGCTGCCATCGTAATTTGTGGGTTTGGAGGGAGACATGATGAGGGCAGAGAGCGGTGCAGAACAGGTGGAAAAAATGAAATGTAGTTGGAATTGGTGCGAATAAGAAGTCCAAAGTTCAGACTGAAGCAGGAATGGGGGAGTCTGGCCGAGCAACACCAGTTGACCGTGATATTGAACAGGCTATCGTTGCCTTGAAGAAAGGTGCACATTTGTTGAAGTATGGGAGGAGAGGAAAGCCTAGATTTTGCCCCTTCAGGCTATCTACGGTAAGTTTCTGTATACAGTATAACACATTTTAATACCTGTGCAAAGGCAGATAATATATAG

Ace file of the UniGene sp_v3.0_unigene14817

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative [Solanum demissum]	-	-	7.0e-11	72%
FL-Next	tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	87%
Sma3	Ran GTPase binding protein, putative	-	-	8.268e-20	-

Source	Gene names
Sma3	At1g65920; At3g47660; At5g12350; At5g19420; At5g42140; F12P19.9; F1P2.210; GSVIVT00000125001; GSVIVT00002263001; GSVIVT00022255001; GSVIVT00023458001; GSVIVT00030935001; GSVIVT00036997001; OJ1354_D07.10; OSJNBa0088A01.18; Os01g0952300; Os04g0583700; Os05g

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Brevis radix-like domain	IPR013591	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G12350.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain chr5:3995789-4000545 FORWARD LENGTH=1075	1.0e-15	87%
RefSeq	Arabidopsis thaliana	NP_568268.3	Regulator of chromosome condensation-like protein with FYVE zinc finger domain-containing protein [Arabidopsis thaliana]	2.0e-15	87%
RefSeq	Populus trichocarpa	XP_002313993.1	predicted protein [Populus trichocarpa]	2.0e-15	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: I1HJX4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1018 aas, your sequence is shorter than subject: 56 - 1090

Fln protein: MGESGRATPVDRDIEQAIVALKKGAHLLKYGRRGKPRFCPFRLSTVSFCIQYNTF*

Protein Length: 57

Fln nts: AATGTCGGAAAACAATGCAACTTACTAATCATTTTGAATTCTATCTACCCCAATTGTACCTATTCTTCTCTGCTTAACAAGACTTTGATAAATGGGCTCCCTGCAACATCAACTTGACATAGATTCCTTGGAGAATTGCTTGGCCCAGCACCACTAGCGGGTAATGCATACATGATATTAACTATGATCTGTTAATTCTGGGAAGCCGCTGCCATCGTAATTTGTGGGTTTGGAGGGAGACATGATGAGGGCAGAGAGCGGTGCAGAACAGGTGGAAAAAATGAAATGTAGTTGGAATTGGTGCGAATAAGAAGTCCAAAGTTCAGACTGAAGCAGGA_-_ATGGGGGAGTCTGGCCGAGCAACACCAGTTGACCGTGATATTGAACAGGCTATCGTTGCCTTGAAGAAAGGTGCACATTTGTTGAAGTATGGGAGGAGAGGAAAGCCTAGATTTTGCCCCTTCAGGCTATCTACGGTAAGTTTCTGTATACAGTATAACACATTTTAATACCTGTGCAAAGGCAGATAATATATAG

Fln Alignment:

Contig14817___GRATPVDRDIEQAIVALKKGAHLLKYGRRGKPRFCPFRLS
I1HJX4_______________GRAGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
73	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain