SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14775

Length: 575 nt

UniGene Fasta

>sp_v3.0_unigene14775
GCAGCTGTCCCAGAACAAGCAGGCAACGAAACGCCTTGCTACAAGCAAGAAAAGGCGAAGATTAACCAAGGGAGAAGCACAGCAAGATCTTCAATCCTTACCTACTTCAGAGGGCCGGATTGTCAAATGCCAATCCAGTACCATCATCGCAGCAGATTCGGATCATACCCAAAATTCGTCGAATTTGGAGGCTTTCTTATCTACCATTGGACATGCGGATTCGCCAGACATGACGACACCGAATAAAACATTTGAGGACAGGGAACAGGACGAGAGCATCAACATGGTTGCAGAGCACCTCTACGGGTTCGAACCTGGGTCGGCCTTCGACAGTGCAATGCCCGTGGGCATACCAATAGAAACTGCATCTGCATTCGATAGTGCTGCAATTAACCTTGTCAGAACAGAAGTCGAGGAGGACCTGGATCTTGAAAATGTTAACGACGTTTTCTGGGAGGAACTGTTGAATGAACATTTCGATTCGCAGGACGATTCAGGAAAAGAGGGGGATGCCAACATCCCAGACCAAGACAAAGGGAACTCCTCCCGAAGCCATGTGAGTCTATTGGCAGAGC

Ace file of the UniGene sp_v3.0_unigene14775

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock factor (HSF)-type, DNA-binding	IPR000232	-	0.0	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUX6

Fln msg: Distance to subject end: 37 aas, your sequence is shorter than subject: 191 - 489

Fln protein: QLSQNKQATKRLATSKKRRRLTKGEAQQDLQSLPTSEGRIVKCQSSTIIAADSDHTQNSSNLEAFLSTIGHADSPDMTTPNKTFEDREQDESINMVAEHLYGFEPGSAFDSAMPVGIPIETASAFDSAAINLVRTEVEEDLDLENVNDVFWEELLNEHFDSQDDSGKEGDANIPDQDKGNSSRSHVSLLAE

Protein Length: 192

Fln nts: GCAGCTGTCCCAGAACAAGCAGGCAACGAAACGCCTTGCTACAAGCAAGAAAAGGCGAAGATTAACCAAGGGAGAAGCACAGCAAGATCTTCAATCCTTACCTACTTCAGAGGGCCGGATTGTCAAATGCCAATCCAGTACCATCATCGCAGCAGATTCGGATCATACCCAAAATTCGTCGAATTTGGAGGCTTTCTTATCTACCATTGGACATGCGGATTCGCCAGACATGACGACACCGAATAAAACATTTGAGGACAGGGAACAGGACGAGAGCATCAACATGGTTGCAGAGCACCTCTACGGGTTCGAACCTGGGTCGGCCTTCGACAGTGCAATGCCCGTGGGCATACCAATAGAAACTGCATCTGCATTCGATAGTGCTGCAATTAACCTTGTCAGAACAGAAGTCGAGGAGGACCTGGATCTTGAAAATGTTAACGACGTTTTCTGGGAGGAACTGTTGAATGAACATTTCGATTCGCAGGACGATTCAGGAAAAGAGGGGGATGCCAACATCCCAGACCAAGACAAAGGGAACTCCTCCCGAAGCCATGTGAGTCTATTGGCAGAGC

Fln Alignment:

Contig14775___QLSQNKQATKRLATSKKRRRLTKGEAQQDLQSLPTSEGRIVKCQSSTIIAADSDHTQNSSNLEAFLSTIGHADSPDMTTPNKTFEDREQDES---INMVAEHLYGFEPGSAFDSAMPVGIPIETASAFDSAAINLVRTEVEEDLDLENVNDVFWEELLNEHFDSQDDSGKEGDANIPDQDKGN---SSRSHVSLLAE
A9NUX6_______________QLSQNKQASKRLATSKKRRRLPKGEAQQDLPSFPASEGRIVKYQSSTSTPADSDHTQNSSNLEAFLSTMGHVDSPDMPTPHKTFQDREQDESSSSISMIAEQLYGFEPGSAFDISMPVDIPIETASAFDRNSVNLVGAEGEEDLDLENVNDVFWEELLNEHFDSQDDSGTEAEANFPDQDKGNFSSSSRSDVNLLAE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
224			66	33	0.997452
225	33	66			0.997452
230	66		33		0.997452
231		66	33		0.997452
237		66		33	0.997452
257		33	66		0.997452
409	60		40		1.0
506	50	50			1.0
559		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain